DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment step and arfgef1

DIOPT Version :9

Sequence 1:NP_001036375.2 Gene:step / 35425 FlyBaseID:FBgn0086779 Length:727 Species:Drosophila melanogaster
Sequence 2:XP_009295669.1 Gene:arfgef1 / 100329953 ZFINID:ZDB-GENE-030131-108 Length:1870 Species:Danio rerio


Alignment Length:568 Identity:152/568 - (26%)
Similarity:243/568 - (42%) Gaps:115/568 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 ERGSGSDS----------SPSSVCVRCSCNSITKSGDRNET-PTMATP----------------- 137
            |.|.|||:          :|.|.....|......|...|:| .::||.                 
Zfish   388 EGGLGSDNENVHANGIPGTPISASFTPSLPDDRLSVSSNDTQESVATSGQAPGAKFSHILQKDAF 452

  Fly   138 ---KSDIKIALKP----PPKPRSPSMAPYTSVATYNITKLAPDSPPPASPTLSTQTVNCSDV--- 192
               :|..|:::||    ||.|:|..:.  :.|.:..:......:   |.|...|..:..:.:   
Zfish   453 LVFRSLCKLSMKPLSDGPPDPKSHELR--SKVLSLQLLLSILQN---AGPIFKTNEMFINAIKQY 512

  Fly   193 ---------TTKVTEVQRLPCDEPNTELISKRT-------------------------EYKHTTI 223
                     .:.|.||..|......|.|.:.:|                         ::|...|
Zfish   513 LCVALSKNGVSSVPEVFELSLSIFLTLLSNFKTHLKMQIEVFFKEIFLYILETSTSSYDHKWMVI 577

  Fly   224 TTTTRTLIVSRP-VELLLNENGEIIARRSPRKSRSNSLGRMLDVQNEI--GTGGLFMEADPCSKN 285
            .|.||....::. |::.:|.:.::.|        :|...|:::..::|  |.||..:...|..:.
Zfish   578 QTLTRICADAQSVVDIYVNYDCDLNA--------ANIFERLVNDLSKIAQGRGGHELGTTPLQEL 634

  Fly   286 SLPPPP---YIDDMRFIDDSSNSQSESERNSNIHKTNKYTSKNNNNDSKRESQQSNLCESCRMLL 347
            :|....   .:..::.:.:.|..|..:        .|..||.......|...|:||..:....:.
Zfish   635 TLRKKGLECLVSILKCMVEWSKDQYVN--------PNSQTSLGRAGQEKPSEQESNESKHPETIN 691

  Fly   348 DRNYINTEQSDNLVILRRPSKQIKDELCEVVSEMEALDVPEDCKHSNKDKQ-MSIGRKKFNMDPK 411
            ....||:..|           .....:....::|...|.||..:...:.|: :..|...||..||
Zfish   692 RYGSINSLDS-----------TASSGIGSYSTQMSGTDNPEQFEVLKQQKEIIEQGIDLFNKKPK 745

  Fly   412 KGIEYLVENRLLRHDPQDVAHFLYKGEGLNKTAIGDYLGEKNDFNEDVLKAFVALHDFTNLILVQ 476
            :||:||.|..:|...|:|:|.||::.|.|:...:|::||:.:..|::|:.|:|...||.....|.
Zfish   746 RGIQYLQEQGMLGTTPEDIAQFLHQEERLDSIQVGEFLGDNDRINKEVMYAYVDQMDFQGKDFVP 810

  Fly   477 ALRQFLWSFRLPGEAQKIDRMMETFAQRY--CQLNPDIFTNTDTCYVLSFAIIMLNTSLHNPSVK 539
            |||.||..||||||||||||:||.||.||  |.....:|.:.||.|||:::||||.|.||:|.||
Zfish   811 ALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVK 875

  Fly   540 DKPTVDQFISMNRGINNGGDLPRGLLESLYESIRTEPFKIPQDDGNDL 587
            :|.|.:|:|.||||||:..|||...|.::|:.|..:  ||...:..:|
Zfish   876 NKMTKEQYIKMNRGINDSKDLPEEYLSAIYDEIAGK--KISMKETKEL 921

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stepNP_001036375.2 Sec7 397..577 CDD:279680 85/182 (47%)
PH_GRP1-like 592..710 CDD:269954
PH 596..708 CDD:278594
arfgef1XP_009295669.1 PLN03076 15..1830 CDD:215560 152/568 (27%)
DCB 29..210 CDD:292830
Sec7_N 447..601 CDD:289549 26/158 (16%)
Sec7 729..913 CDD:279680 85/185 (46%)
DUF1981 1246..1327 CDD:286414
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5307
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D815698at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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