DRSC/TRiP Functional Genomics Resources

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Protein Alignment nolo and paplna

DIOPT Version :9

Sequence 1:NP_001036374.1 Gene:nolo / 35424 FlyBaseID:FBgn0051619 Length:1394 Species:Drosophila melanogaster
Sequence 2:XP_005169942.1 Gene:paplna / 562930 ZFINID:ZDB-GENE-070815-4 Length:1187 Species:Danio rerio


Alignment Length:1355 Identity:277/1355 - (20%)
Similarity:398/1355 - (29%) Gaps:598/1355 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 WSSWSDWSTCSRTCDGGIMHQMRRC-----GSPGSCRGESTRYRICNMQPCPE-QQDFRSSQCSA 136
            |..||.:..|||:|.||:..:.|||     ....||.|....||.||:|.||| .:|||..|||.
Zfish    24 WGEWSSYGECSRSCGGGVTMRTRRCVTHRTDGGHSCVGPDKSYRSCNIQDCPEGSRDFREEQCSQ 88

  Fly   137 YNDVPYDGTLYKWTPHYDYVEPCALTC--RGHPAHLVEDISRETGDGNAEEAEHYDEQSVIVQLS 199
            ::...:.|..|||.|:|....||.|.|  ||                   |..:|.::|.:|   
Zfish    89 FDGTDFQGKRYKWLPYYGGENPCELNCIPRG-------------------ENFYYRQKSSVV--- 131

  Fly   200 ARVQDGTRCRSGSLDMCIQGKCQRVGCDLKIGSTKKIDGCGVCGGDGNSCS-------------- 250
                |||.||.|..|:|:.|.|:|:|||..:.|.::.|.|..|||||.|||              
Zfish   132 ----DGTPCRPGGKDICVDGLCKRLGCDHMLESPQEEDACLQCGGDGQSCSRLKNSFSMRNLPKG 192

  Fly   251 ----------------------------------------------------------------- 250
                                                                             
Zfish   193 YNQMFIIPVGATTISIKETLPTRNYLAIKNLRGEYYLNGHWVIDLSRAASIAGTVLHYQRGREGE 257

  Fly   251 -------------QPL---------------------------FNWEMAPMSQCSVTCGSGYKMS 275
                         :||                           :.|.....|.||..|||||:..
Zfish   258 KSPEMITGRGPTTEPLVIELITQEVNEGVDYEYYLPNGGSTEGYYWSYGSWSACSKECGSGYQSR 322

  Fly   276 RPICRNRLTNADVDDTLCSVTNRPEASVEQCNTHSCP-------------------PR------- 314
            ...|  ...:....|.||:...|| .|...||...||                   ||       
Zfish   323 LVFC--TFEDEAYSDYLCASLPRP-LSNRTCNEQQCPQTRRMAYVYEAQLWRPTETPRVYVQVYS 384

  Fly   315 WIADDWSTCSRLCGHGYRERMVVC-AEESNGIKTRVADIMCR--TPKPPTQETCIIEECPHWEVE 376
            |.|.:||.|...||.|.:.|.|.| :.:|.|.:. |.|..|.  ||:|.:|:.|.:::|..:.:.
Zfish   385 WTAGEWSPCPVTCGGGLQARRVECMSHDSTGSRL-VEDSQCTAYTPRPLSQQNCNMQKCAQYSIY 448

  Fly   377 DWTGCSVSCGQGIQMRGVECKSTDGSLSAKCDPLTKPGSMQQCSTGIHCGGSLNKVGGTIIVGSS 441
            .|:.|||:||.|.|.|.|.|..:||:                                       
Zfish   449 SWSQCSVTCGSGKQTRDVVCIGSDGA--------------------------------------- 474

  Fly   442 RSLNERSERQLDSSDADEDNEDENDEGDDVDDLESGQDTDDGEGLSYADQPLLYAHRTQSRLNQE 506
                                        .|:|...|                          || 
Zfish   475 ----------------------------SVEDYACG--------------------------NQ- 484

  Fly   507 APDEPRTMHLMNGNSNNNFNRGEDESEGPSL-DPTYIKDNEWSPCSVTCGEGIRRRTYNCKIFLE 570
             |..||                |...|.|.. .|......:|..||.:||.|:|.|...|.   :
Zfish   485 -PKPPR----------------EQICEMPMCRSPIAWHIGDWGLCSKSCGSGLRERQVICS---D 529

  Fly   571 YSRTVATVNDSLCEGKKPHDEVERCVEDPCMLPS---------------HGF----DD---QFPR 613
            ..|.:....:  |:||.....||.|...||..|.               |||    :|   :.|:
Zfish   530 RQRNLYRAEE--CQGKPKPPTVESCNAQPCYRPQEVPSMQDPTGHDNTLHGFMPYSEDPLLEIPQ 592

  Fly   614 DS----------------IKVGVSEPGKTYVW--------REQGYTSCSASCLGGVEELIINCVR 654
            ::                .:.|....|:|...        ::||..||:.|..|        |..
Zfish   593 NNAAHSPHGTALTPHCSQTQYGCCPDGRTPASGPQHQGCPQDQGQPSCTWSRYG--------CCH 649

  Fly   655 EDNGRVVSPFLCSPETKPEARVRTCNDRPCPPRWNY----SDYTPCSKSCGIGIKTREVQCIHEV 715
            :  |..|:              :..|...||..|.:    ||..|   |..:...:....|.::.
Zfish   650 D--GVTVA--------------QGQNMEGCPDAWTHWSSSSDTVP---SAPVDCHSSTYGCCYDG 695

  Fly   716 TRGGDNTMVVPNSMCPQPPPADRQYCNVLDCPVRWEVG---EW----------SKCSHTCGYG-- 765
            ......|   ....|..||...::   .|.|.:...||   :|          |:|.| ..||  
Zfish   696 VTAASGT---HGEGCSNPPSNTQR---SLSCDLPNTVGPCDQWTSRFYFDRSASRCLH-FWYGGC 753

  Fly   766 ------FKDRKVECKQIMAQE-------------------------------HKIERPESMCPSA 793
                  |...: ||:::..:.                               |:.:|......:|
Zfish   754 HGNSNNFASEE-ECQKMCLRSELRQRDQAHVLSLQHGRRRFPAHVQLSSSGAHRAQRAHQPASNA 817

  Fly   794 ----KPA----------DKK---------------PCNVKPCP-------------PEDP-KPVI 815
                .||          ||.               ||.|.|.|             |.|| :...
Zfish   818 MQQSNPAASWTAEGVSIDKTDPSTVEGLVGQRVVLPCRVTPPPSSAVLVEWRRDGVPVDPTRHEQ 882

  Fly   816 QINNSTHI---------------QHDPKKTK--ITLKVGG-----AGL----------------- 841
            |::.|..:               ..|.|:..  |.|.|.|     ||:                 
Zfish   883 QLDGSLLVGPITLQDSGWFLCVATRDDKRDHRYIYLSVSGSSQNNAGISEVDSSQSYTSQSSSRF 947

  Fly   842 ---------VFFGTQVKIKC---PVKRYNRTKIKWSKDHKPLQRSRKYKVSKKGALRILDITFRD 894
                     ...|...|::|   ||...:...|.||:..:|| .|.::.....|.|.|..:|..|
Zfish   948 NIDYSPLVEARAGQTAKLQCSVLPVSAIHAVTIHWSRAGQPL-NSLRHSQHSDGTLVIKQLTADD 1011

  Fly   895 AGVYSC-------------------HAGLSSAEISIEVKAKPGQQIEELEQQETERLVREKSGT- 939
            :|:|:|                   ...::.|.|.::|......|:..:...|...:...::|. 
Zfish  1012 SGLYTCTVTDAQKFEERQVQLRVLGDLRITKAPIDVDVVQGSTAQLACVVTGENVNVGWSRNGVP 1076

  Fly   940 ------EALTSAD-------MKSAD-GTGTSTAVGPNSHVNGSAQQHGSRRRQQQSERLQNGRER 990
                  ....|||       ::|.| ||.|..|......|:.:|:...::..||.          
Zfish  1077 VRPDGHRVHVSADGTLILNNVQSVDEGTYTCNAYTGTLSVSAAAEIRLAKTPQQD---------- 1131

  Fly   991 SRRPKSDGVQHADSSIMEDDLSQLVQSEDRIPQPASASSGGSRTRTLLAMPYFQA 1045
                 .||.|.:              |.|.:.||..|:........|.:.||:.:
Zfish  1132 -----IDGGQFS--------------SSDCVDQPELANCKLIVYARLCSSPYYSS 1167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
noloNP_001036374.1 TSP1 78..124 CDD:214559 20/50 (40%)
TSP1 546..600 CDD:214559 16/53 (30%)
TSP1 750..807 CDD:214559 22/137 (16%)
IGc2 845..902 CDD:197706 19/78 (24%)
PLAC 1355..1384 CDD:285849
paplnaXP_005169942.1 TSP1 24..75 CDD:214559 20/50 (40%)
ADAM_spacer1 181..293 CDD:310520 2/111 (2%)
TSP1 303..356 CDD:214559 18/55 (33%)
TSP1 388..442 CDD:214559 19/54 (35%)
TSP1 449..498 CDD:214559 24/159 (15%)
TSP1 504..557 CDD:214559 16/57 (28%)
KU 720..771 CDD:238057 12/52 (23%)
Ig_3 839..906 CDD:316449 10/66 (15%)
IGc2 960..1022 CDD:197706 19/62 (31%)
I-set 1039..1121 CDD:333254 16/81 (20%)
PLAC 1142..1173 CDD:312271 6/26 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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