DRSC/TRiP Functional Genomics Resources

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Protein Alignment nolo and col28a1a

DIOPT Version :9

Sequence 1:NP_001036374.1 Gene:nolo / 35424 FlyBaseID:FBgn0051619 Length:1394 Species:Drosophila melanogaster
Sequence 2:NP_001334976.1 Gene:col28a1a / 555428 ZFINID:ZDB-GENE-070705-84 Length:1170 Species:Danio rerio


Alignment Length:198 Identity:46/198 - (23%)
Similarity:71/198 - (35%) Gaps:56/198 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   555 GEGIRRRTYNCKIFLEYSRTVATV-NDSLCEGKKP---HDEVERC----VEDPCMLPSHGFDDQF 611
            |..|||.|...:......|.||.| .|.|.:.:..   .|..|..    :|...:...:..|.|:
Zfish   882 GSAIRRATQLFQAARPGVRKVAVVLTDGLADNRDAVSLKDAAEGAHSAGIEIFVVGIVNNSDSQY 946

  Fly   612 P--RDSIKVGVSEPGKTYVWREQGYTSCSASCLGGVEELIINCVRE-DNGRVVS-------PFLC 666
            .  ::.:.:..|:|.:.||:....:..     |..:|..::|.:.| |||:|.|       ||  
Zfish   947 AEFKNEMNILASDPDENYVYLTDDFLK-----LHALESRLLNHICEHDNGKVFSSSGKTIHPF-- 1004

  Fly   667 SPETKPEARVRTCNDRPCPPRWNYSDYTPCSKSCGIGIKTREVQCIHEVTRGGDNTMVVPNSMCP 731
            .|:..|        ||..||.   |||.                    :|.|.::|..:.....|
Zfish  1005 GPDPVP--------DRTEPPT---SDYF--------------------ITEGKEDTPPIDFETLP 1038

  Fly   732 QPP 734
            |.|
Zfish  1039 QQP 1041

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
noloNP_001036374.1 TSP1 78..124 CDD:214559
TSP1 546..600 CDD:214559 14/52 (27%)
TSP1 750..807 CDD:214559
IGc2 845..902 CDD:197706
PLAC 1355..1384 CDD:285849
col28a1aNP_001334976.1 vWFA_subfamily_ECM 49..214 CDD:238727
Collagen 266..339 CDD:189968
Collagen 311..384 CDD:189968
Collagen 491..548 CDD:189968
Collagen 529..590 CDD:189968
Collagen 561..633 CDD:189968
Collagen 700..776 CDD:189968
VWA 803..980 CDD:306576 22/102 (22%)
Kunitz_BPTI 1117..1168 CDD:278443
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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