DRSC/TRiP Functional Genomics Resources

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Protein Alignment nolo and paplnb

DIOPT Version :9

Sequence 1:NP_001036374.1 Gene:nolo / 35424 FlyBaseID:FBgn0051619 Length:1394 Species:Drosophila melanogaster
Sequence 2:NP_001018400.1 Gene:paplnb / 553586 ZFINID:ZDB-GENE-030131-6023 Length:548 Species:Danio rerio


Alignment Length:652 Identity:148/652 - (22%)
Similarity:222/652 - (34%) Gaps:192/652 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 WSSWSDWSTCSRTCDGGIMHQMRRCGS-----PGSCRGESTRYRICNMQPCPE-QQDFRSSQCSA 136
            :..:..:..|||||.||:..:.|.|.:     ..:|.|.|..|::||.|.||. .:|||..|||.
Zfish    27 YGEYGPYGPCSRTCGGGVAVRTRICNTMRTDGGHNCVGPSKSYKLCNTQECPAGSRDFREEQCSH 91

  Fly   137 YNDVPYDGTLYKWTPHYDYVEPCALTC--RGHPAHLVEDISRETGDGNAEEAEHYDEQSVIVQLS 199
            ::.:.:.|..|.|.|:|....||.|.|  ||                   |..:|..:..:|   
Zfish    92 FDQMTFQGKRYTWQPYYGASNPCELVCVPRG-------------------ENFYYRHRPAVV--- 134

  Fly   200 ARVQDGTRCRSGSLDMCIQGKCQRVGCDLKIGSTKKIDGCGVCGGDGNSCSQPLFNWEMAPMSQC 264
                |||.|..|..|:|::|.|:.|.....:|...:........|.|.:.....:.:..:..|:|
Zfish   135 ----DGTLCHVGRRDVCVEGVCRAVSHGEIVGFEDRDIPVTSRHGPGAAVHLDTYRYTYSAYSEC 195

  Fly   265 SVTCGSGYKMSRPICRNRLTNADVDDTLCSV--TNRPEASVEQCNTHSCPPRWIADDWSTCSRLC 327
            |..||.|.:.....|.:..|:|.||::.|..  ..:|.|.| .||.|:| ..:.|..:..||..|
Zfish   196 SRLCGGGVQSRTVYCVHERTSAMVDESHCIAKGLRKPTAQV-ACNEHAC-AEYSAGPFGDCSVTC 258

  Fly   328 GHGYRERMVVCAEESNGIKTRVADIMCR-TPKPPTQETCIIEECP---HWEVEDWTGCSVSCGQG 388
            |.|.:.|.|:|.   .|...|:::..|. ..:|...:.|....|.   .:...|::.|:.|||.|
Zfish   259 GEGLQTREVICV---GGRGERLSEHHCSGLTRPQDTKACKRPACHQVFRYYTNDFSLCTRSCGTG 320

  Fly   389 IQMRGVECKSTDGS--LSAKCDPLTKPGSMQQCSTGIHCGGSLNKVGGTIIVGSSRSLNERSERQ 451
            .:.|.|.|...|..  ...:|..|::|.:::.|:|        ....|...|.|.::.|      
Zfish   321 TRERRVVCMDLDQHPYSDDRCASLSRPHAVENCNT--------QPCPGPQTVPSVQNPN------ 371

  Fly   452 LDSSDADEDNEDENDEGDDVDDLESGQDTDDGEGLSYADQPL-LY-----------AHRTQSRLN 504
                                     |.::.....|||...|: :|           .|..||...
Zfish   372 -------------------------GYESSLRGFLSYTHSPVSVYRPSDPYPTVTGPHCAQSHYG 411

  Fly   505 QEAPDEPRTMHLMNGNSNNNFNRGEDESEGPSLDPTYIKDNEWSPCSVTCGEGIRRRTYNCKIFL 569
            . .||                  |...:.||.                  |||            
Zfish   412 C-CPD------------------GHTTASGPR------------------GEG------------ 427

  Fly   570 EYSRTVATVNDSLCEGKKPHDEVERCVEDPCM-------------LPSHGFDDQFPRDSIKVGVS 621
                         |    .||:.:|.....|:             .|...:.|..|..|:.....
Zfish   428 -------------C----AHDDCQRSRYGCCLDGITAALGYRRAGCPDSSYGDHSPSASVCSLAR 475

  Fly   622 EPGKTYVWREQGY-----TSCSASCLGGVEELIINCVREDNG-RVVSPFLCSPETKPEARVRTCN 680
            :.|..|.::.:.|     .|||....||       |  :.|| ..||...|....|...|.|...
Zfish   476 DVGPCYEYKSRFYFDHSSGSCSQFWFGG-------C--QGNGNNFVSKVACERTCKASVRGREPT 531

  Fly   681 DR 682
            .|
Zfish   532 SR 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
noloNP_001036374.1 TSP1 78..124 CDD:214559 16/50 (32%)
TSP1 546..600 CDD:214559 7/53 (13%)
TSP1 750..807 CDD:214559
IGc2 845..902 CDD:197706
PLAC 1355..1384 CDD:285849
paplnbNP_001018400.1 TSP1 28..78 CDD:214559 16/49 (33%)
TSP1 249..300 CDD:214559 13/53 (25%)
TSP1 309..359 CDD:214559 15/57 (26%)
Kunitz_BPTI 470..522 CDD:278443 14/60 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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