DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nolo and Adamts19

DIOPT Version :9

Sequence 1:NP_001036374.1 Gene:nolo / 35424 FlyBaseID:FBgn0051619 Length:1394 Species:Drosophila melanogaster
Sequence 2:NP_001101903.2 Gene:Adamts19 / 361332 RGDID:1308359 Length:1211 Species:Rattus norvegicus


Alignment Length:845 Identity:196/845 - (23%)
Similarity:289/845 - (34%) Gaps:336/845 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 GAGGGPGQW-----------------SSWSDWSTCSRTCDGGIMHQMRRCGSPGS----CRGEST 113
            |....||:|                 ..||.||:|||:|..|:..:.|:|...||    |.|...
  Rat   615 GTDCDPGKWCKAGECTRRTPAPEHLAGEWSTWSSCSRSCGSGVSSRERKCPGLGSEARDCNGPRK 679

  Fly   114 RYRICNMQPCPE-QQDFRSSQCSAYN-DVPYDGTLYKWTPHYDYVEPCALTCRGHPAHLVEDISR 176
            :||||...|||. ...||..||.||: ...|.....:|...:|..:||||.|        ..:.:
  Rat   680 QYRICENPPCPAGLPGFRDWQCQAYSVRTSYPKHALQWQAVFDEEKPCALFC--------SPVGK 736

  Fly   177 ETGDGNAEEAEHYDEQSVIVQLSARVQDGTRCRSGSLDMCIQGKCQRVGCDLKIGSTKKIDGCGV 241
                          ||.|:  ||.:|.|||.|....||:|..|:||:.|||..:||..:.|.|||
  Rat   737 --------------EQPVL--LSEKVLDGTSCGYQGLDVCANGRCQKAGCDGLLGSLAREDHCGV 785

  Fly   242 CGGDGNSCSQPLFNWEMAPMSQCSVTCGSGYKMSRPICRNRLTNADVDDTLCSVTNRPEASVEQC 306
            |.|:|.||                                ::...|.:.|.              
  Rat   786 CNGNGKSC--------------------------------KVIKGDFNHTR-------------- 804

  Fly   307 NTHSCPPRWIADDWSTCSRLCGHGYRERMVVCAEESNGIKTRVADIMCRTPKPPTQETCIIEECP 371
                                 |.||.|.:|:.| .:..||                   ::||.|
  Rat   805 ---------------------GAGYVEVLVIPA-GARRIK-------------------VVEEKP 828

  Fly   372 -----------------HWEVEDWTGCSVSCGQGIQ--MRGVECKSTDGSLSAKCDPLTKPGSM- 416
                             .|::|. :|.....|..:.  .||:..|     :||| .|.|.|..: 
  Rat   829 AHSYLALRDASKQSINSDWKIEH-SGAFSLAGTTVHYIRRGLWEK-----ISAK-GPTTTPLHLL 886

  Fly   417 ----QQCSTGIHCGGSLNKVGGTIIVGSSRSLNERSERQLDSSDADEDNEDENDEGDDVDDLESG 477
                |..:.|:|...::                        .||...||:...:.|         
  Rat   887 VLLFQDQNYGLHYEYTV------------------------PSDPLPDNQSSKESG--------- 918

  Fly   478 QDTDDGEGLSYADQPL-LYAHRTQSRLNQEAPDEPRTMHLMNGNSNNNFNRGEDESEGPSLDPTY 541
                          || ::.|.                                           
  Rat   919 --------------PLFMWTHA------------------------------------------- 926

  Fly   542 IKDNEWSPCSVTCGEGIRRRTYNC-KIFLEYSRTVATVNDSLCEG-KKPHDEVERCVEDPCMLPS 604
                .|..|:.|||.|.|:.|.:| ||.   ::.::.|::..|:. .||..::.:|.|.||... 
  Rat   927 ----GWGDCNATCGGGERKTTVSCTKIM---NKNISLVDNKKCKDLTKPEPQIRKCNEQPCQTR- 983

  Fly   605 HGFDDQFPRDSIKVGVSEPGKTYVWREQGYTSCSASCLGGVEELIINCVRE-DNGRVVSPF---L 665
                                    |....:|:||.:|..||:...:.|.|: :||.::..:   .
  Rat   984 ------------------------WMMTEWTTCSRTCGKGVQSRQVACTRQLENGTLIRAWERDC 1024

  Fly   666 CSPETKPEARVRTCNDRPCPPRWNYSDYTPCSKSCGIGIKTREVQCIHEVTRGGDNTMVVPNSMC 730
            ..|  || |.::.|..:.|...|....::.||..||.|::.|.|:|.:            |...|
  Rat  1025 IGP--KP-ATMQRCEGQDCMTVWEAGVWSECSVKCGKGVRHRTVRCTN------------PRKKC 1074

  Fly   731 P-QPPPADRQYC-NVLDCPVRWEVGEWSKCSHTCGYGFKDRKVECKQIMAQEHKIE-RPESMC-P 791
            . ...|.:.:.| :...|.| |.||:|||||.|||.|.:.|.::|.      |||. |..:.| .
  Rat  1075 VLSTRPREVEDCEDYSKCYV-WRVGDWSKCSITCGKGMQSRVIQCM------HKITGRHGNECFS 1132

  Fly   792 SAKPADKKPCNVKPCPPEDPKPVIQINNSTHIQHDPKKTKITLKVGGAGLVFFGTQVKIKCPVKR 856
            |.|||..:||:::||..:     |.:|..|    .|:...:|.|.       .|.|..:.|.|.|
  Rat  1133 SEKPAAYRPCHLQPCNEK-----INVNTIT----SPRLAALTFKC-------LGDQWPVYCRVIR 1181

  Fly   857  856
              Rat  1182  1181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
noloNP_001036374.1 TSP1 78..124 CDD:214559 21/66 (32%)
TSP1 546..600 CDD:214559 17/55 (31%)
TSP1 750..807 CDD:214559 26/58 (45%)
IGc2 845..902 CDD:197706 5/12 (42%)
PLAC 1355..1384 CDD:285849
Adamts19NP_001101903.2 Pep_M12B_propep 162..277 CDD:396235
ZnMc_ADAMTS_like 329..546 CDD:239801
ADAM_CR_2 563..630 CDD:407643 4/14 (29%)
ADAM_spacer1 794..904 CDD:368694 29/195 (15%)
TSP1_ADAMTS 928..980 CDD:408800 17/54 (31%)
TSP1_ADAMTS 984..1040 CDD:408800 16/58 (28%)
TSP1_ADAMTS 1044..1086 CDD:408800 12/53 (23%)
TSP1_ADAMTS 1095..1147 CDD:408800 25/57 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

Return to query results.
Submit another query.