DRSC/TRiP Functional Genomics Resources

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Protein Alignment nolo and Adamts10

DIOPT Version :9

Sequence 1:NP_001036374.1 Gene:nolo / 35424 FlyBaseID:FBgn0051619 Length:1394 Species:Drosophila melanogaster
Sequence 2:NP_001258374.1 Gene:Adamts10 / 314655 RGDID:1598320 Length:1104 Species:Rattus norvegicus


Alignment Length:559 Identity:153/559 - (27%)
Similarity:203/559 - (36%) Gaps:185/559 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 GGGAGGGPGQWSSWSDWSTCSRTCDGGIMHQMRRCGSPGS------CRGESTRYRICNMQPCPE- 125
            |....|..|.|..|:.|..|||:|.||:....|.|.||..      |.||..|:|.||...||. 
  Rat   540 GSRPEGVDGAWGPWTPWGDCSRSCGGGVSSSSRHCDSPRPTIGGKYCLGERRRHRSCNTNDCPPG 604

  Fly   126 QQDFRSSQCSAYNDVPYDGTLYKW-TPHYDYVEPCALTCRGHPAHLVEDISRETGDGNAEEAEHY 189
            .||||..|||.::.||:.|..|.| |.....|:.|:|||.                  |:....|
  Rat   605 SQDFREMQCSEFDSVPFRGKFYTWKTYRGGGVKACSLTCL------------------ADGFNFY 651

  Fly   190 DEQSVIVQLSARVQDGTRCRSGSLDMCIQGKCQRVGCDLKIGSTKKIDGCGVCGGDGNSC----- 249
            .|:      :|.|.|||.||..::|:|:.|:|:.||||..:||..:.|.|.||||||::|     
  Rat   652 TER------AAAVVDGTPCRPDTVDICVSGECKHVGCDRVLGSDLREDKCRVCGGDGSACETIEG 710

  Fly   250 -----------------------------------------------------SQ---------- 251
                                                                 ||          
  Rat   711 VFSPALPGTGYEDVVWIPKGSVHIFIQDLNLSLSHLALKGDQESLLLEGLPGTSQPHRLPLAGTT 775

  Fly   252 -------------------------------------------------PLFNWEMAPMSQCSVT 267
                                                             |.::|..||.::||..
  Rat   776 FHLRQGPDQAQSLEALGPINASLIIMVLAQAELPALRYRFNAPIARDALPPYSWHYAPWTKCSAQ 840

  Fly   268 CGSGYKMSRPICRNRLTNADVDDTLCSVTNRPEASVEQCNTHSCPPRWIADDWSTCSRLCGHGYR 332
            |..|.::....|||:|.::.|....||..::.......|||..|||.|:..:||.|||.|..|.|
  Rat   841 CAGGSQVQVVECRNQLDSSAVAPHYCSAHSKLPKRQRACNTEPCPPDWVVGNWSRCSRSCDAGVR 905

  Fly   333 ERMVVCAEESNGIKTR-VADIMCRTPKPPTQETCIIEEC-PHWEVEDWTGCSVSCGQGIQMRGVE 395
            .|.|||....:..:.: :.|..|..|:||..|.|....| |.|...||:.|:.|||.|::.|.|.
  Rat   906 SRSVVCQRRVSAAEEKALDDSACPQPRPPVLEACQGPMCPPEWAALDWSECTPSCGPGLRHRVVL 970

  Fly   396 CKSTDGSLS---AKCDPLTKPGSMQ------------------QCSTGIHCGGSLNKVGGTIIVG 439
            |||.|...:   ..|.|..||.|..                  :|||....|.....|..|...|
  Rat   971 CKSADQRSTLPPGHCPPAAKPPSTMRCNLRRCPPARWVASEWGECSTQCGLGQQQRTVRCTSHTG 1035

  Fly   440 S-SRSLNE--------RSERQLDS----SDADEDNEDEN 465
            . ||...|        :.|.:.||    .|..|:.:|.|
  Rat  1036 QPSRECTEALRPSTMQQCEAKCDSVVPPGDGPEECKDVN 1074

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
noloNP_001036374.1 TSP1 78..124 CDD:214559 20/51 (39%)
TSP1 546..600 CDD:214559
TSP1 750..807 CDD:214559
IGc2 845..902 CDD:197706
PLAC 1355..1384 CDD:285849
Adamts10NP_001258374.1 Pep_M12B_propep 40..180 CDD:396235
ZnMc_ADAMTS_like 239..454 CDD:239801
ADAM_CR_2 469..537 CDD:407643
TSP1 550..602 CDD:214559 20/51 (39%)
ADAM_spacer1 706..818 CDD:368694 2/111 (2%)
TSP1_ADAMTS 829..884 CDD:408800 17/54 (31%)
TSP1_ADAMTS 888..944 CDD:408800 20/55 (36%)
TSP1_ADAMTS 948..1002 CDD:408800 19/53 (36%)
TSP1_ADAMTS 1007..1057 CDD:408800 11/49 (22%)
PLAC 1070..1102 CDD:400844 2/5 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I11383
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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