DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nolo and Adamts17

DIOPT Version :9

Sequence 1:NP_001036374.1 Gene:nolo / 35424 FlyBaseID:FBgn0051619 Length:1394 Species:Drosophila melanogaster
Sequence 2:XP_218753.6 Gene:Adamts17 / 293004 RGDID:1308783 Length:1122 Species:Rattus norvegicus


Alignment Length:793 Identity:190/793 - (23%)
Similarity:273/793 - (34%) Gaps:294/793 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 GQWSSWSDWSTCSRTCDGGIMHQMRRCGSP-----GS-CRGESTRYRICNMQPCPE-QQDFRSSQ 133
            |.||.||.||.|||||..|...:.|:|.:|     |: |:|.|..:..|...|||: ...||..|
  Rat   542 GDWSPWSAWSMCSRTCGTGARFRQRKCDNPPPGPGGTHCQGASVEHAACENLPCPKGVPSFRDQQ 606

  Fly   134 CSAYNDVPYD--GTLYKWTPHYDYVEPCALTCRGHPAHLVEDISRETGDGNAEEAEHYDEQSVIV 196
            |.|::.:...  |.|   |......:||.|.|        ..:.:|:.                :
  Rat   607 CQAHDRLSSKKRGLL---TAMVVDDKPCELYC--------SPLGKESP----------------L 644

  Fly   197 QLSARVQDGTRCRSGSLDMCIQGKCQRVGCDLKIGSTKKIDGCGVCGGDGNSCSQPLFNWEMAPM 261
            .::.||.|||.|.....|:|:.|:||::|||..|||..|.|.||||.|||.:|            
  Rat   645 LVADRVLDGTPCGPYETDLCVYGRCQKIGCDGIIGSAAKEDRCGVCSGDGKTC------------ 697

  Fly   262 SQCSVTCGSGYKMSRPICRNRLTNADVDDTLCSVTNRPEASVEQCNTHSCPPRWIADDWSTCSRL 326
                                |:...|.                   :||                
  Rat   698 --------------------RVVKGDF-------------------SHS---------------- 707

  Fly   327 CGHGYRERMVVCAEESNGIKTRVADIMCRTPKPPTQETCIIEECPHWEVEDWTGCSVSCGQGIQM 391
            .|.||.|.:|:.|   ...:.||.:     .||......:.:........||             
  Rat   708 RGTGYIEAVVIPA---GARRIRVVE-----DKPAHSFLALKDSSKRSINSDW------------- 751

  Fly   392 RGVECKSTDGSLSAKCDPLTKPGSMQQCSTGIHCGGSLNKVGGTIIVGSSRSLNERSERQLDSSD 456
                             .:..||..|              :.|||:....|.|.|:...:     
  Rat   752 -----------------KIELPGEFQ--------------IAGTIVRYVRRGLWEKFSAK----- 780

  Fly   457 ADEDNEDENDEGDDVDDLESGQDT-----------DDGEGLSYA-DQPLLYAHRTQSRLNQEAPD 509
                                |..|           |...|:.|. ..|:     .||..||..|.
  Rat   781 --------------------GPTTVPLHLMVLLFHDQNYGIHYEYTIPV-----NQSTENQSEPA 820

  Fly   510 EPRTMHLMNGNSNNNFNRGEDESEGPSLDPTYIKDNEWSPCSVTCGEGIRRRTYNCKIFLEYSRT 574
            :|:....:..:|.                        |..|||.||.|.||...:|...:  ::|
  Rat   821 KPQDALFLWTHSG------------------------WEGCSVQCGGGERRTIVSCTRIV--NKT 859

  Fly   575 VATVNDSLC-EGKKPHDEVERCVEDPCMLPSHGFDDQFPRDSIKVGVSEPGKTYVWREQGYTSCS 638
            ...||||.| :..:|..:|.||...||...                         |....::.||
  Rat   860 TTLVNDSDCPQASRPEPQVRRCNSHPCQSR-------------------------WVAGQWSPCS 899

  Fly   639 ASCLGGVEELIINCVRE-DNGRVVS--PFLCSPETKPEARVRTCNDRPCPPRWNYSDYTPCSKSC 700
            |:|..|::...:.||.: .||..|:  |..|| |.:| ..|::|..:.|...|..|:::.||.:|
  Rat   900 ATCEKGIQHREVTCVYQLQNGTHVTTRPIYCS-EPRP-TPVQSCEGQDCLSIWEASEWSECSANC 962

  Fly   701 GIGIKTREVQCIHE------VTRGGDNTMVVPNSMCPQPPPADRQYCNVLDCPVRWEVGEWSKCS 759
            |.||:.|.|.|.:.      .||             |:...|...|....:    |:.|:|||||
  Rat   963 GKGIRKRTVTCTNSQGKCDAATR-------------PKAEEACEDYSGCYE----WKTGDWSKCS 1010

  Fly   760 HTCGYGFKDRKVECKQIMAQEHKIE-RPESMCPS-AKPADKKPCNVKPCPPEDPKPVIQINNSTH 822
            .|||.|.:.|.|:|.      ||:. |..|.||: :|||..:.|:.:.|..:     |.:|..| 
  Rat  1011 STCGKGLQSRVVQCM------HKVTGRHGSECPTLSKPAAYRQCHQEVCNEK-----INVNTIT- 1063

  Fly   823 IQHDPKKTKITLK 835
               .|:...:|.|
  Rat  1064 ---SPRLAALTYK 1073

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
noloNP_001036374.1 TSP1 78..124 CDD:214559 21/51 (41%)
TSP1 546..600 CDD:214559 20/54 (37%)
TSP1 750..807 CDD:214559 24/58 (41%)
IGc2 845..902 CDD:197706
PLAC 1355..1384 CDD:285849
Adamts17XP_218753.6 Pep_M12B_propep 61..179 CDD:279848
AANH_like 168..>244 CDD:294206
Reprolysin 230..447 CDD:279729
ZnMc_ADAMTS_like 230..447 CDD:239801
TSP1 544..596 CDD:214559 21/51 (41%)
ADAM_spacer1 698..808 CDD:283607 30/221 (14%)
TSP_1 893..946 CDD:278517 17/54 (31%)
TSP1 950..>981 CDD:214559 11/30 (37%)
TSP1 1001..1053 CDD:214559 24/57 (42%)
PLAC 1080..1106 CDD:285849
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

Return to query results.
Submit another query.