DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nolo and Sspo

DIOPT Version :9

Sequence 1:NP_001036374.1 Gene:nolo / 35424 FlyBaseID:FBgn0051619 Length:1394 Species:Drosophila melanogaster
Sequence 2:XP_017177063.1 Gene:Sspo / 243369 MGIID:2674311 Length:5197 Species:Mus musculus


Alignment Length:1648 Identity:339/1648 - (20%)
Similarity:459/1648 - (27%) Gaps:693/1648 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 GQWSSWSDWSTCSRTCDGGIMHQMRRCGSP------GSCRGESTRYRICNMQPCPEQQDFRSSQC 134
            |.|:.|..|:.||.:|.||...:.|.|..|      ..|.|.|.....||:|.||...|......
Mouse  2563 GAWAEWGPWTACSVSCGGGHQSRQRSCVDPPPKNGGAPCPGPSHEKAPCNLQLCPGDTDCEPGLV 2627

  Fly   135 SAYNDVPYDGTLYKWTPHYDYVEPCALTCRGHPAHLVEDISRETGDGNAEEAEHYDEQSVIVQLS 199
            ....::...|          .|.||..:|      |..:.:|                    ..|
Mouse  2628 HVNAELCQKG----------LVPPCPPSC------LDPEANR--------------------SCS 2656

  Fly   200 ARVQDGTRCRSGSLDMCIQ-GKCQRVG-CDLKIGS-------TKKIDGCGVC-----------GG 244
            ....:|.||..|.|   :| ..|..:. |...:|.       ...:|.|..|           |.
Mouse  2657 GHCMEGCRCPPGLL---LQDSHCLPLSECPCLVGQKLIQPRLAFLLDNCSQCICEKGTLLCKPGA 2718

  Fly   245 DGNSCSQPLFNWE-MAPMSQCSVTCGSGYKMSRPICRNRLTNADVDDTLCSVTNRP--------- 299
            ...||     .|. .:|.:.|..:||||.:     .|.|           |.||.|         
Mouse  2719 CSQSC-----GWSAWSPWTACDRSCGSGVR-----ARFR-----------SPTNPPVAFGGSPCE 2762

  Fly   300 ------EASVEQCNTHSCPPRWIA-DDWSTCSRLC-----GHGYRERMVVCAEESNGIKTRVADI 352
                  :|....|.|..  |.|.. ..||:||:.|     ..|:|:|..:|...        .|.
Mouse  2763 GDRQELQACYTDCGTEI--PGWTPWTSWSSCSQSCLVPGGDPGWRQRSRLCPSS--------RDT 2817

  Fly   353 MCRTPKPPTQ-ETCIIEECP---HWEV-EDWTGCSVSCGQGIQMRGVECK-STDGS--------- 402
            .|  |...|| |.|....||   .|.: ..|:.||.||..|||.||..|. |..|:         
Mouse  2818 FC--PGEATQEEPCSPPVCPVPSAWGLWASWSTCSASCNGGIQTRGRSCSGSAPGNPVCLGPHTQ 2880

  Fly   403 --------LSAKCDPLTKPGSM-----QQC--------------STGIHCGG----SLNKVGGTI 436
                    .:|:|     ||:|     :||              ..|:.|.|    |.|...|..
Mouse  2881 TRDCNMHPCTAQC-----PGNMVFRSAEQCLEEGGPCPQLCLAQDPGVECTGSCAPSCNCPPGLF 2940

  Fly   437 IVGSSRSLNERSERQLDSSDADEDNEDENDEGDDVDDLESGQDTDDGEGLSYADQPLLYAHR--- 498
            :..:|.....:...||                               .|..||  |...||.   
Mouse  2941 LHNASCLPRSQCPCQL-------------------------------HGQLYA--PGAVAHLDCN 2972

  Fly   499 -----------TQSRLNQEAPDEPRT-----MHLMNGNSNNNFNRGED--------ESEGPSLDP 539
                       |..|........|.|     ....|......|..|.:        |.:||:||.
Mouse  2973 NCTCISGEMVCTSKRCPVACGWSPWTPWSPCSQSCNVGIRRRFRAGTEPPAAFGGAECQGPNLDA 3037

  Fly   540 TYIK----------DNEWSPCSVTCGEGIRRRTYNCKIFLEYSRTVATVNDSLCEGKKPHDEVE- 593
            .:..          .:.|:||||.||.|.|.||                     :|..||..:| 
Mouse  3038 EFCSLRPCRGPGAAWSSWTPCSVPCGGGYRNRT---------------------QGSGPHSPIEF 3081

  Fly   594 -RCVEDPCMLPSHGFDDQFPRDSIKVGVSEPGKTYVWRE--QGYTSCS---------------AS 640
             .|...||..|..|.   .|.|.            .|.:  ||..||:               ..
Mouse  3082 STCSLQPCAGPVPGV---CPEDQ------------QWLDCAQGPASCAHLSIPGEANQTCHPGCY 3131

  Fly   641 CLGGVEELIIN--------CVREDNGRVVSP-----FLCSPETKPEARVRTCNDRPC---PPRWN 689
            ||.|:  |::|        |.....||:.||     ..|...:.....:..|:..||   .|.| 
Mouse  3132 CLSGM--LLLNNVCVPVQDCPCAHRGRLYSPGSAVHLPCENCSCISGLITNCSSWPCEEGQPAW- 3193

  Fly   690 YSDYTP---CSKSCGIGIKTREVQCIHEVTRGGDN-----TMVVPNSMCPQPPPADRQYCNVLDC 746
             |.:||   ||.||....:.|...|.....|...:     |:..|.::|| .|.|:.:.|.:..|
Mouse  3194 -SSWTPWSVCSASCNPARRHRHRFCARPPHRAPFSLVLLTTVAAPTTLCP-GPEAEEEPCLLPGC 3256

  Fly   747 -------PVRWEVGEWSKCSHTCGYGFKDRKVECKQ------------IMAQEHKIER---PESM 789
                   |  |  ..||.||.:||.|.:.|...|.|            ..||....:.   |.:.
Mouse  3257 NQAGGWSP--W--SPWSGCSRSCGGGLRSRTRACDQPSPQGLGDFCEGPQAQGEACQAQPCPVTN 3317

  Fly   790 CPSAKPADKKPCNVKPCP--------------PEDPKPVIQINNSTHIQHDPKKTKITLKVGGAG 840
            |.:.:.|:..||. .|||              |....|:.::                |...||.
Mouse  3318 CSAMEGAEYSPCG-PPCPRSCDDLVHCVWRCQPGCYCPLGKV----------------LSADGAI 3365

  Fly   841 LV----------------FFGTQV-------KIKCPVKRYNRTKI------------KWSKDHKP 870
            .|                ..|||:       ...|...|.|.|.:            ||:...:|
Mouse  3366 CVKPSYCSCLDLLTGKRHHAGTQLMRPDGCNHCTCMEGRLNCTDLPCQVSGDWCPWSKWTACSQP 3430

  Fly   871 LQ-----RSRKYKVSKKGALRILDITFRDAGVYSC------HAGLSSAEISIEVKAKPGQQIEEL 924
            .:     |||                       :|      |.|....|                
Mouse  3431 CRGQTRTRSR-----------------------ACVCPAPQHGGSPCPE---------------- 3456

  Fly   925 EQQETERLVREKSGT------EALTSADMKSADGTGTSTAVGPNSHVNGSAQQHGSRRRQQQSER 983
                      |..||      ||..:|.....||..:..  ||.|..:....| ..|.|......
Mouse  3457 ----------ESGGTGVQHQMEACPNATACPVDGAWSPW--GPWSSCDACLGQ-SYRSRVCSHPP 3508

  Fly   984 LQNGRERSRRPKSDGVQHA----DSSIMEDDLSQLVQSEDRIP------------------QPAS 1026
            :.:|    .:|...|.|.:    :||.:..|..   ..:|.:|                  ||.|
Mouse  3509 ISDG----GKPCLGGYQQSRPCRNSSTLCTDCG---GGQDLLPCGQPCPHSCQDLSLGSTCQPGS 3566

  Fly  1027 A--SSG-----GSRTRT-LLAMP-----YFQALLSNLQLLWPLQRFKDSRGQHLLQGEALKFGID 1078
            |  .||     |..::. |...|     :||.....:    |..|.: |.|..|...|:|:    
Mouse  3567 AGCQSGCGCPPGQLSQDGLCVFPVDCHCHFQPRAMGI----PENRSR-SVGSTLSSWESLE---- 3622

  Fly  1079 LSGKDFDQDESERVPAEQLPPEVLHSPSDP--------EYHEPSKSGPEADVPHVPPHMPHARWE 1135
                               |.||:..|.|.        :.||                       
Mouse  3623 -------------------PGEVVTGPCDNCTCVAGILQCHE----------------------- 3645

  Fly  1136 TGAAASTTAVPSLPNDGFVYRWMLGEWSQCSQECGAAGSGLQRRTVSCQRAAKATSSGSTSDTEN 1200
                     |||.|..|....|  |.|.:||..|   |.|.|.|:..|   |:....|....:. 
Mouse  3646 ---------VPSCPGPGIWSSW--GPWEKCSVSC---GGGEQLRSRQC---ARPPCPGLAQQSR- 3692

  Fly  1201 NVVDNSECFAHGLELPEFFQSCGNEACP------QWSKGDWTPCQRSHCHGRNTAMQRR-EVTCR 1258
                  .|..|         .|....||      :....|..|...:|..|:......| :..|.
Mouse  3693 ------ICHIH---------VCRETGCPAGRLYRECQPSDGCPFSCAHVTGQVACFSERCKEGCH 3742

  Fly  1259 YPNGT-EGSICDEYERPA------------------------------------------MRQEC 1280
            .|.|| :..:....|.|.                                          ::.:|
Mouse  3743 CPEGTFQHHVACVQECPCVLTVLLLQELGLASAALGSYPTLLGDEGKPLGPGVELLPGQMLQTDC 3807

  Fly  1281 YNERCE------------------GVWRVEPWSECNAPCGRKGIKYRILQCVWYGSRRPAGNVCK 1327
            .|..|.                  |.|.:  ||.|:..||..|.:.|..||| ..:..|.|..|:
Mouse  3808 GNCSCVHGKLSCSMVECSRVHGSFGPWGM--WSLCSRSCGGLGTRTRTRQCV-LPTLAPGGLSCR 3869

  Fly  1328 HQPRPAVMKVCKSPACQAQLSSS 1350
            ...:.  ::.|.||.|.....|:
Mouse  3870 GPLQD--LEYCFSPECPGTAGST 3890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
noloNP_001036374.1 TSP1 78..124 CDD:214559 17/51 (33%)
TSP1 546..600 CDD:214559 16/55 (29%)
TSP1 750..807 CDD:214559 19/71 (27%)
IGc2 845..902 CDD:197706 14/86 (16%)
PLAC 1355..1384 CDD:285849
SspoXP_017177063.1 VWD 229..378 CDD:214566
C8 434..505 CDD:370094
TIL 509..564 CDD:366828
VWD 593..753 CDD:214566
C8 791..863 CDD:214843
TIL 866..919 CDD:366828
VWD 1054..1201 CDD:365869
C8 1245..1311 CDD:370094
TIL 1315..1371 CDD:366828
LDLa 1416..1451 CDD:238060
LDLa 1456..1490 CDD:238060
LDLa 1492..1526 CDD:238060
LDLa 1532..1563 CDD:197566
Ldl_recept_a 1603..1639 CDD:365841
TSP1 1737..1788 CDD:214559
TIL 1857..1908 CDD:366828
TSP1 1952..2005 CDD:214559
FA58C <2142..2262 CDD:330301
LDLa 2275..2309 CDD:238060
LDLa 2414..2448 CDD:238060
LDLa 2471..2505 CDD:238060
TSP1 2565..2617 CDD:214559 17/51 (33%)
TIL 2640..2682 CDD:366828 13/70 (19%)
TSP1 2725..2774 CDD:214559 14/64 (22%)
TSP_1 2841..2889 CDD:365867 13/47 (28%)
TIL 2893..2952 CDD:366828 13/63 (21%)
VWC_out 2954..3001 CDD:214565 12/79 (15%)
TSP1 2994..3045 CDD:214559 10/50 (20%)
TIL 3097..3149 CDD:366828 12/65 (18%)
TSP1 3193..3256 CDD:214559 18/65 (28%)
TSP1 3262..3314 CDD:214559 14/55 (25%)
TIL 3322..3372 CDD:366828 12/66 (18%)
TSP1 3418..>3458 CDD:214559 10/88 (11%)
TSP1 3482..3526 CDD:214559 10/50 (20%)
TIL 3536..3592 CDD:366828 11/58 (19%)
TSP1 3655..3699 CDD:214559 15/67 (22%)
TSP1 3832..3884 CDD:214559 18/56 (32%)
TSP1 3901..3949 CDD:214559
TSP1 3967..4020 CDD:214559
TSP1 4025..4077 CDD:214559
TIL 4080..4135 CDD:366828
TSP1 4180..4230 CDD:214559
TSP1 4274..4325 CDD:214559
TSP1 4389..4440 CDD:214559
TIL 4444..4499 CDD:366828
TSP1 4639..4687 CDD:214559
TIL 4701..4747 CDD:366828
TSP1 4791..4840 CDD:214559
TIL 4842..4896 CDD:366828
TIL 4948..5006 CDD:366828
VWC 5008..5063 CDD:327433
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3538
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.