DRSC/TRiP Functional Genomics Resources

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Protein Alignment nolo and mig-17

DIOPT Version :10

Sequence 1:NP_001036374.1 Gene:nolo / 35424 FlyBaseID:FBgn0051619 Length:1394 Species:Drosophila melanogaster
Sequence 2:NP_505901.2 Gene:mig-17 / 179575 WormBaseID:WBGene00003248 Length:509 Species:Caenorhabditis elegans


Alignment Length:518 Identity:87/518 - (16%)
Similarity:158/518 - (30%) Gaps:186/518 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   841 LVFFGTQVKIK---CPVKRYNRTKIKWSKDHKPLQRSRKYKVSK-KGALRILDITFRDAGVY--S 899
            :||.||.:..:   ||:      .|.|:::.:  :|....::.: :...|.|:.||.|...:  |
 Worm   128 MVFAGTWIATQERDCPL------WISWAEEEE--ERVLNEEIRRLEEKERDLNSTFVDDTFFMNS 184

  Fly   900 CHAGLSSAE--ISIEVKAKPGQQIE-ELEQQETERLVREKSGTEALTSADMKSADGTGT-----S 956
            ..:..||.:  ||.::..|..:.:: .||:      ::|.:.||.....|.|.|....|     .
 Worm   185 TDSDNSSTDALISSDMPKKLRKFVDITLEE------MQENNSTEMTLKIDSKKAIDKFTIWLKEQ 243

  Fly   957 TAVGPNSH-----------VNGSAQQHGSRRRQQQSERLQNGRERSRRPKSDGVQHADSSIMED- 1009
            |.:..:.|           :||::...|   ........:||              ..||::|| 
 Worm   244 TGLPRHEHAVLITKFDLISINGNSATQG---MAYVGNICENG--------------DSSSVVEDI 291

  Fly  1010 --DLSQLV----------------------QSEDRIPQPASASSGGSRTRTLLAMPYFQALLSNL 1050
              .|:.|:                      .|.|......:.|....|...|.:     ..:||.
 Worm   292 GAGLTSLIMAHEIGHSLGALHDGAYETAECDSNDNYLMAVAVSGSADRQSFLNS-----RRMSNC 351

  Fly  1051 QLLWPLQRFKDSRGQHLLQGEALKFGIDLSGKDFDQDESERVPAEQLPPEVLHSPSDPEYHEPSK 1115
            .:...::..|:.....:.:.:..| |.|:|.|||.:...|.|...:                   
 Worm   352 SINSIIENLKEPTANCVKKWKTKK-GKDVSQKDFIKKPGELVKITR------------------- 396

  Fly  1116 SGPEADVPHVPPHMPHARWETGAAASTTAVPSLPNDGFVYRWMLGEWSQCSQECGAAGSGLQRRT 1180
                               :...|...|.:|.| :.|:.:...:.|...||.     |...:.:|
 Worm   397 -------------------QCQVAFGPTFIPCL-HIGYFHEQSICERIWCSD-----GESDECQT 436

  Fly  1181 VSCQRAAKATSSGSTSDTENNVVDNSECFAHGLELPEFFQSCGNEACPQWSKGDWTPCQRSHCHG 1245
            ::...|                .|.:||        .:...|...:|.|.:| .|..|:      
 Worm   437 LNYFPA----------------FDGTEC--------GYNMWCLEGSCVQNTK-KWMDCK------ 470

  Fly  1246 RNTAMQRREVTCRYPNGTEGSICDEYERPAMRQECYNERCEGVWRVEPWSECNAPCGRKGIKY 1308
                            ......|.:|....::..|.::....:        |...|.:||..|
 Worm   471 ----------------DINSKTCSKYSTSKLKHYCKSKDFREI--------CCRTCAKKGKIY 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
noloNP_001036374.1 TSP1 78..124 CDD:214559
TSP1_ADAMTS 256..311 CDD:465950
TSP1_ADAMTS 315..370 CDD:465950
TSP1_ADAMTS 373..420 CDD:465950
TSP1 546..600 CDD:214559
TSP1_ADAMTS 629..684 CDD:465950
TSP1_ADAMTS 688..746 CDD:465950
TSP1_ADAMTS 750..806 CDD:465950
Ig 845..914 CDD:472250 17/76 (22%)
Ig strand B 848..852 CDD:409353 0/6 (0%)
Ig strand C 861..865 CDD:409353 1/3 (33%)
Ig strand E 883..887 CDD:409353 0/3 (0%)
Ig strand F 897..902 CDD:409353 1/6 (17%)
TSP1_ADAMTS 1157..1227 CDD:465950 10/69 (14%)
TSP1_ADAMTS 1289..1343 CDD:465950 5/20 (25%)
PLAC 1355..1384 CDD:462560
mig-17NP_505901.2 ZnMc_ADAM_like 162..361 CDD:239795 40/226 (18%)
ADAMTS_CR_2 388..460 CDD:465496 17/139 (12%)
Blue background indicates that the domain is not in the aligned region.

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