DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nolo and adamts8

DIOPT Version :9

Sequence 1:NP_001036374.1 Gene:nolo / 35424 FlyBaseID:FBgn0051619 Length:1394 Species:Drosophila melanogaster
Sequence 2:XP_002940685.2 Gene:adamts8 / 100497759 XenbaseID:XB-GENE-994782 Length:956 Species:Xenopus tropicalis


Alignment Length:578 Identity:147/578 - (25%)
Similarity:206/578 - (35%) Gaps:194/578 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VNMNWTSPKIW---AALFVTTL-------CLLD--------------TQAAWAKKLNASQAFDDT 43
            :.:|.|.|  |   :|:.:|..       ||||              |.|.:.......|.|...
 Frog   412 LQLNKTVP--WSECSAMHLTEFFDSGHGDCLLDAPSKSIELPNGLPGTSALYDLDSQCRQVFGKE 474

  Fly    44 WNTASDLENELEQ----------QKRSKVQSAGGG-GGAGGGP---------------------- 75
            :   |...|.||:          |::::..:..|. ..|.|.|                      
 Frog   475 F---SHCPNTLEKDVCSQLWCRIQEKNECHTKNGSLPWADGTPCGDNHMCSDGVCVKEDIVVRPK 536

  Fly    76 ----GQWSSWSDWSTCSRTCDGGIMHQMRRCGSP-----GS-CRGESTRYRICNMQPCP-EQQDF 129
                |.|.||..|..|||||.||:....|.|..|     |. |:|:...|..||:|.|| .:..|
 Frog   537 VPVDGSWGSWGPWGECSRTCGGGVRFSYRDCNDPVPQNGGKYCKGQRAMYESCNIQECPVHELSF 601

  Fly   130 RSSQCSAYNDVPY---DGTLYKWTPHY---DYVEPCALTCRGHPAHLVEDISRETGDGNAEEAEH 188
            |..||..||...|   :|||.:|.|.|   .|.:.|.|.|                     :|..
 Frog   602 REEQCMKYNSYNYTDEEGTLLQWIPKYSGVSYRDRCKLVC---------------------QARD 645

  Fly   189 YDEQSVIVQLSARVQDGTRCRSGSLDMCIQGKCQRVGCDLKIGSTKKIDGCGVCGGDGNSC---- 249
            .:|..|   ..::|.|||.|...||.:|:||:|...|||..:||:||:|.||||||||:||    
 Frog   646 RNEFKV---FQSKVVDGTLCEPDSLKVCVQGQCISAGCDHILGSSKKMDKCGVCGGDGSSCRKIT 707

  Fly   250 --------------SQP--LFNWEMAPMSQCSVTCGSGYKMSRPICRNRLTNADVD--------- 289
                          |.|  ..|.::...|...:.....|...:....:.|.|.|..         
 Frog   708 DSFNKSKYGYTDIVSIPAGATNIDIKKRSHRGIIYDGNYLAIKKADGSYLLNGDFAVSYMEQDLH 772

  Fly   290 ---------------DTLCSVTNRPEA-------------------------SVEQCNT------ 308
                           :.:.|....||:                         :|....|      
 Frog   773 LRGIVLKYSGSLTTLERIRSFYPLPESLTIQLLSVLAETLPPKVKYTFFIPKNVSYAKTKPKLSH 837

  Fly   309 HSCPP----RWIADDWSTCSRLCGHGYRERMVVCAEESNGIKTRVADIMCRTPKPPTQETCIIEE 369
            ||..|    :|...||..||:.||.|::.|.|.|.:...|    .:|...:..:|.....|....
 Frog   838 HSLRPLLTSQWTFRDWFPCSKSCGFGWQRRAVECQDVEGG----PSDQCPQELRPIDIRPCGDLP 898

  Fly   370 CPHWEVEDWTGCSVSCGQGIQMRGVECKSTDG--SLSAKCDPLTKPGS------MQQC 419
            ||.|.|..|:.||.|||:|::.:.|.|....|  :...||||..:|..      :::|
 Frog   899 CPIWRVGGWSPCSQSCGEGVRSQRVFCVDYTGRETEEEKCDPGKRPAKPVNSCILEEC 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
noloNP_001036374.1 TSP1 78..124 CDD:214559 21/51 (41%)
TSP1 546..600 CDD:214559
TSP1 750..807 CDD:214559
IGc2 845..902 CDD:197706
PLAC 1355..1384 CDD:285849
adamts8XP_002940685.2 Pep_M12B_propep 33..142 CDD:366707
ZnMc_ADAMTS_like 236..441 CDD:239801 7/30 (23%)
ADAM_CR_2 455..527 CDD:375321 13/74 (18%)
TSP1 543..595 CDD:214559 21/51 (41%)
ADAM_spacer1 704..823 CDD:368694 11/118 (9%)
TSP1 846..900 CDD:214559 15/57 (26%)
TSP1 905..942 CDD:214559 14/36 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 48 1.000 Domainoid score I11725
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.