DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nolo and adamts18

DIOPT Version :10

Sequence 1:NP_001036374.1 Gene:nolo / 35424 FlyBaseID:FBgn0051619 Length:1394 Species:Drosophila melanogaster
Sequence 2:XP_009301678.1 Gene:adamts18 / 100150128 ZFINID:ZDB-GENE-070815-1 Length:1244 Species:Danio rerio


Alignment Length:947 Identity:207/947 - (21%)
Similarity:280/947 - (29%) Gaps:457/947 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 GP----GQWSSWSDWSTCSRTCDGGIMHQMRRCGSPGS------CRGESTRYRICNMQPC-PEQQ 127
            ||    ||||.||:||.|||||.||:|::.|.|.||..      |:|....:::||.:|| |:..
Zfish   590 GPKAVHGQWSGWSEWSDCSRTCGGGVMYRERSCNSPSPQHNGKFCQGPGRLHQLCNTKPCQPDGV 654

  Fly   128 DFRSSQCSAYNDVPYDGTLYKWTPHYDYVEP---CALTCRGHPAHLVEDISRETGDGNAEEAEHY 189
            |||:.||:.||..|:.|..|||.| |..||.   |.|.|                     .||.:
Zfish   655 DFRAQQCAEYNSKPFRGWYYKWKP-YTKVEEEDICKLYC---------------------IAEDF 697

  Fly   190 DEQSVIVQLSARVQDGTRCRSGSLDMCIQGKCQRVGCDLKIGSTKKIDGCGVCGGDGNSCS---- 250
            |   ....:|::|:|||.|......:||.|.|:.||||..:||...:|.||||.||.::|.    
Zfish   698 D---FFFAMSSKVKDGTSCSDYKGGVCIDGICEPVGCDQVLGSKAALDACGVCKGDNSTCKFYSG 759

  Fly   251 ----------------------------------------------------------------- 250
                                                                             
Zfish   760 QYTLQHRANEYYPVVMVPAGARSIQVQEMEISNSYLAVRSLKRGTYYLTADWTVDWPGRFQFAGT 824

  Fly   251 ----QPLFN-----------------------------WE--------------MAPMSQCSVTC 268
                |..||                             ||              ....|.||..|
Zfish   825 TFNYQRSFNRPETLFATGPTNETLLFEILLQGKNPGITWEYTLPHPEKKHNYTWSVVRSDCSAPC 889

  Fly   269 GSGYKMSRPIC-RNRLTNADVDDTLCSVTNRPEASVEQCNTHSCPPRWIADDWSTCSRLCGHGYR 332
            ..|...::.|| :::.|  .|:.:||:...||......|||..||..|....|..|||.||.|.:
Zfish   890 AGGRVSTKAICLQDQQT--QVNSSLCNPQTRPVVGSHLCNTQPCPAYWTTGKWGVCSRTCGGGQQ 952

  Fly   333 ERMVVCAEESNGIKTRV-ADIMCRTPKPPTQETCIIEEC-PHWEVEDWTGCSVSCGQGIQMRGVE 395
            .|.:.|..:....:..| |..:|....|...:.|..:.| |.|....||.||.:||:|::.|.|.
Zfish   953 TRNIRCLRKVTYQREEVAAQSLCPVMAPAQLQPCNTQSCPPEWSTSSWTQCSKTCGRGLKKRSVF 1017

  Fly   396 CKSTDGSLSA------KCDPLTKPGSMQQCSTGIHCGGSLNKVGGTIIVGSSRSLNERSERQLDS 454
            |:|||....|      .|....||.:.:.|                  |.|....|||.:     
Zfish  1018 CRSTDPGARAVVVPDSMCKLHLKPKAQESC------------------VLSRCPKNERLQ----- 1059

  Fly   455 SDADEDNEDENDEGDDVDDLESGQDTDDGEGLSYADQPLLYAHRTQSRLNQEAPDEPRTMHLMNG 519
                                                                             
Zfish  1060 ----------------------------------------------------------------- 1059

  Fly   520 NSNNNFNRGEDESEGPSLDPTYIKDNEWSPCSVTCGEGIRRRTYNCKIFLEYSRTVATVNDSLCE 584
                                 :| .:.|..||.:||.|:|||..:|                   
Zfish  1060 ---------------------WI-TSAWGECSASCGAGVRRRELHC------------------- 1083

  Fly   585 GKKPHDEVERCVEDPCMLPSHGFDDQFPRDSIKVGVSEPGKTYVWREQGYTSCSASCLGGVEELI 649
            |:|                          ||               :.|||...|.         
Zfish  1084 GEK--------------------------DS---------------QGGYTEFPAR--------- 1098

  Fly   650 INCVREDNGRVVSPFLCSPETKPEARV-RTCNDRPCP----PR------------WNYSDYTPCS 697
                           .|....||||.: ::||:.|||    |:            |..|.:..|:
Zfish  1099 ---------------RCRNLQKPEADLEQSCNNGPCPEPLAPQLLQPGGPSVTLGWYSSPWLQCT 1148

  Fly   698 KSCGIGIKTREVQCIHEVTRGGDNTMVVPNSMC-PQPPPADRQYCNVLDCPVRWEVGEWSKCSHT 761
            .|||.|::||.|||:.:..         |:..| |...|...:.||                :| 
Zfish  1149 VSCGGGVQTRSVQCLRQGR---------PSVGCFPHQRPISSRACN----------------TH- 1187

  Fly   762 CGYGFKDRKVECKQIMAQEHKIERPESMCPSAKPADKKPCNVKPCPPEDP-----KPVIQINNST 821
                                       .||:..|.        |.||..|     :|.|...:..
Zfish  1188 ---------------------------FCPAPIPV--------PVPPPSPTLKEDQPCIDFFSWC 1217

  Fly   822 HI--QHDPKKTKITLKVGGAGLVFFGTQVKIKCPVKR 856
            |:  ||           |.....|:|.|....|..||
Zfish  1218 HLVPQH-----------GVCNHKFYGQQCCKSCSAKR 1243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
noloNP_001036374.1 TSP1 78..124 CDD:214559 24/52 (46%)
TSP1_ADAMTS 256..311 CDD:465950 18/69 (26%)
TSP1_ADAMTS 315..370 CDD:465950 15/55 (27%)
TSP1_ADAMTS 373..420 CDD:465950 18/52 (35%)
TSP1 546..600 CDD:214559 12/53 (23%)
TSP1_ADAMTS 629..684 CDD:465950 11/55 (20%)
TSP1_ADAMTS 688..746 CDD:465950 18/58 (31%)
TSP1_ADAMTS 750..806 CDD:465950 4/55 (7%)
Ig 845..914 CDD:472250 5/12 (42%)
Ig strand B 848..852 CDD:409353 0/3 (0%)
Ig strand C 861..865 CDD:409353
Ig strand E 883..887 CDD:409353
Ig strand F 897..902 CDD:409353
TSP1_ADAMTS 1157..1227 CDD:465950
TSP1_ADAMTS 1289..1343 CDD:465950
PLAC 1355..1384 CDD:462560
adamts18XP_009301678.1 Pep_M12B_propep 68..207 CDD:460254
ZnMc_ADAMTS_like 299..500 CDD:239801
ADAMTS_CR_2 517..584 CDD:465496
TSP1 598..649 CDD:214559 22/50 (44%)
ADAMTS_CR_3 654..754 CDD:437068 45/124 (36%)
ADAMTS_spacer1 756..868 CDD:461796 5/111 (5%)
TSP1_ADAMTS 883..931 CDD:465950 16/49 (33%)
TSP1_ADAMTS 935..991 CDD:465950 15/55 (27%)
TSP1_ADAMTS 995..1052 CDD:465950 21/74 (28%)
TSP1_ADAMTS 1060..1119 CDD:465950 26/143 (18%)
TSP1_ADAMTS 1139..1189 CDD:465950 19/102 (19%)
PLAC 1210..1240 CDD:462560 8/40 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.