DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cul2 and cul4a

DIOPT Version :9

Sequence 1:NP_610117.1 Gene:Cul2 / 35420 FlyBaseID:FBgn0032956 Length:753 Species:Drosophila melanogaster
Sequence 2:NP_957321.1 Gene:cul4a / 394002 ZFINID:ZDB-GENE-040426-1357 Length:635 Species:Danio rerio


Alignment Length:640 Identity:157/640 - (24%)
Similarity:307/640 - (47%) Gaps:59/640 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KPKIVEFV--DVWPRLRCIAESVITLTKVERSVWNTSFSDVYTLCVAQPEPMADRLYGETKHFLE 66
            :||:.:..  |.|.:||....::...|.::.:: ...:..|..||..:..||   ||.:.:...|
Zfish    36 RPKLTDSYTEDTWLKLRDAVSAIQNSTSIQYNL-EELYQAVENLCSYKVSPM---LYKQLRQVCE 96

  Fly    67 QHVQEMLAKKVLIEGECSHSNGGPDLLQRYYITWMEYSQGIKYLHQLYIYLNQQHIKKQKITDTE 131
            :|||..      |......|......|:|....|.::.:....:..::::|::.::.:..:..: 
Zfish    97 EHVQAQ------IHQFREESLDSLSFLKRMNRCWQDHCRQTIMIRSIFLFLDRTYVLQNSLLPS- 154

  Fly   132 SFYGNLSSDAAEQMEIGELGLDIWRLYMIE--YLSSELVRHILEGIAADRASNGTLDHHRVQIIN 194
                           |.:.||:::|.:::.  .:.|..|:.|||.:..:| |..|:|...::.:.
Zfish   155 ---------------IWDTGLELFRTHIVSDAAVQSRTVQGILEQVERER-SGETVDRSLLRSLL 203

  Fly   195 GVIHSFVEVQDYKKTGSLKLYQELFEGPMLEASGAYYTDEANKLLHRCSVSEYMQEVIRILEYES 259
            |::            ..|::|::.||...|..:...|..|..:|:....|.||:..|.|.||.|:
Zfish   204 GML------------SDLQVYKDSFEQRFLSETTRLYAAEGQRLMQERDVPEYLHHVARRLEEEN 256

  Fly   260 RRAQKFLHVSSLPKLRKECEEKFINDRLGFIYSE-CREMVSEERRQDLRNMYVVLKPIPDNLKSE 323
            .|...:|..|:...|....|::.:.:.:..|..: .|.::.|.|..:|..:|.:...:...| :.
Zfish   257 DRVISYLDQSTQKPLIATVEKQLLGEHMTTILQKGLRTLLDENRVCELTLLYELFSKVKGGL-TA 320

  Fly   324 LITTFLDHIKSEGLQTVSALKGENIHIAFVENMLKVHHKYQELIADVFENDSLFLSALDKACASV 388
            |:.::.::|||.|.:||.:.:.:.   ..|:.:|....:...:....|:.:..|::|:.:|..:.
Zfish   321 LLQSWREYIKSVGAETVCSPERDR---EMVQELLDFKDQMDSVTQSCFQRNESFINAMKEAFENF 382

  Fly   389 INRRPTERQPCRSAEYVAKYCDTLLK--KSKTCEAEIDQKLTNNITIFKYIEDKDVYQKFYSRLL 451
            ||:||.     :.||.:|||.|:.|:  ..:..|.|:::.|...:.||::|..|||::.||.:.|
Zfish   383 INQRPN-----KPAELIAKYVDSKLRAGNKEATEEELERILDKIMIIFRFIHGKDVFEAFYKKDL 442

  Fly   452 AKRLIHEQSQSMDAEEGMINRLKQACGYEFTNKLHRMFTDISVSVDLNNKFNTHLKDSNVDLGIN 516
            ||||:..:|.|:|||:.|:::||..||..||:||..||.|:.:|.|:..:|..::::......|.
Zfish   443 AKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQTEPSNIE 507

  Fly   517 LAIKVLQAGAWPLGSTQVIPFAVPQEFEKSIKMFEDYYHKLFSGRKLTWLHHMCHGELKLSHLKK 581
            |.:.:|..|.||  |...:...:|.|..|..::|:.:|....|||||.|...:.|..||....:.
Zfish   508 LTVNILTMGYWP--SYTPMDVHLPAEMVKLQEVFKLFYLGKHSGRKLQWQPTLGHAVLKTEFKEG 570

  Fly   582 SYIVTMQTYQMAIILLFETCDSLSCREIQNTLQLNDETFQKHMQPII--ESKLLN 634
            ...:.:..:|..::|:|...|..|..||:....:.:...::.:|.:.  ::::||
Zfish   571 KKELQVSLFQTLVLLMFNESDECSVEEIRVATGIEEGELKRTLQSLACGKARVLN 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul2NP_610117.1 Cullin 39..639 CDD:279260 150/603 (25%)
CULLIN 436..575 CDD:214545 50/138 (36%)
Cullin_Nedd8 680..745 CDD:214883
cul4aNP_957321.1 Cullin 50..635 CDD:279260 153/626 (24%)
CULLIN 427..567 CDD:214545 52/141 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.930

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