DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul2 and pcu4

DIOPT Version :9

Sequence 1:NP_610117.1 Gene:Cul2 / 35420 FlyBaseID:FBgn0032956 Length:753 Species:Drosophila melanogaster
Sequence 2:NP_594195.1 Gene:pcu4 / 2543116 PomBaseID:SPAC3A11.08 Length:734 Species:Schizosaccharomyces pombe


Alignment Length:730 Identity:164/730 - (22%)
Similarity:336/730 - (46%) Gaps:66/730 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 FSDVYTLCVAQPEPMADRLYGETKHFLEQHVQ---EMLAKKVLIEGECSHSNGGPDLLQRYYITW 100
            :|.|..|..|.   .|.|.:...:|.:...:|   :.....:.:||..:.:|....::.    .|
pombe    54 YSGVENLTRAD---QASRCFNILQHHMSSGIQLLKDSAESFIQLEGTETDTNACTVVVG----CW 111

  Fly   101 MEYSQGIKYLHQLYIYLNQQHIKKQKITDTESFYGNLSSDAAEQMEIGELGLDIWR--LYMIEYL 163
            .::.:.::.:..::.|:::..:                |...:...|.||.|.::|  |..::.:
pombe   112 NKWLERVEIVQNIFYYMDKTFL----------------SHHPDYPTIEELSLSLFREKLMAVKNI 160

  Fly   164 SSELVRHILEGIAADRASNGTLDHHRVQIINGVIHSFVEVQDYKKTGSLKLYQELFEGPMLEASG 228
            ....:..:|:......:|..| ||..:|....::|            ..::|..:|....|....
pombe   161 QIPFLNSLLQSFENLHSSKST-DHAYLQDAMLMLH------------RTEMYSSVFVPMYLVMLS 212

  Fly   229 AYYTDEANKLLHRCSVSEYMQEVIRILEYESRRAQKFLHVSSLPKLRKECEEKFINDRLGFIYSE 293
            .:|..|:::.:....:.||::..:..||.|....:||..|.....:|:..:...|...|..:...
pombe   213 RFYDTESSQKIQELPLEEYLEYAMSSLEREDAYVEKFDIVRDKKSIRETVQRCLITSHLDTLTKG 277

  Fly   294 CREMVSEERRQDLRNMYVVLKPIPDNLKSE-LITTFLDHIKSEGLQTVSALKGENIHIAFVENML 357
            ..:.:.:......:.:|.:|:   .|.::| ||..:.|.:...|.:.|:   .|:.....|:.:|
pombe   278 ISQFIEKRDAHSCKLLYALLQ---FNHETEYLIQPWSDCLVDVGFKLVN---DESKDDTLVQELL 336

  Fly   358 KVHHKYQELIADVFENDSLFLSALDKACASVIN-RRPTERQPCRSAEYVAKYCDTLLKKSKTCEA 421
            ..|...|.::.:.|.:|.....|:.||..:.|| .:.::|:  ..|..:|||.|.||:..:....
pombe   337 SFHKFLQVVVDESFLHDETLSYAMRKAFETFINGAKGSQRE--APARLIAKYIDYLLRVGEQASG 399

  Fly   422 --EIDQKLTNNITIFKYIEDKDVYQKFYSRLLAKRLIHEQSQSMDAEEGMINRLKQACGYEFTNK 484
              .:.:..:..:.:|:||..||:::.:|...:||||:..:|.|...|..:::.||:.||.:||:.
pombe   400 GKPLKEVFSEILDLFRYIASKDIFEAYYKLDIAKRLLLNKSASAQNELMLLDMLKKTCGSQFTHS 464

  Fly   485 LHRMFTDISVSVDLNNKFNTHLKDSNVDLGINLAIKVLQAGAWPLGSTQVIPFAVPQEFEKSIKM 549
            |..||.|:::|.:..:.|. |.|.:: :|..:|.:.||....||  |.......:|.:.::.:..
pombe   465 LEGMFRDVNISKEFTSSFR-HSKAAH-NLHRDLYVNVLSQAYWP--SYPESHIRLPDDMQQDLDC 525

  Fly   550 FEDYYHKLFSGRKLTWLHHMCHGELKLSHLKKSYIVTMQTYQMAIILLFETC---DSLSCREIQN 611
            ||.:|.....|:|::|...:.|..:|......:..:::..:|..::|.|..|   :.:|.::::.
pombe   526 FEKFYLSKQVGKKISWYASLGHCIVKARFPLGNKELSISLFQACVLLQFNNCLGGEGISYQDLKK 590

  Fly   612 TLQLNDETFQKHMQPI----IESKLLNASSENLAGETRIELNLDYTNKRTKFKISSALQKETPQE 672
            :.:|:|....:.:|.:    |...::...|:..:.:|...:|..:|:|..:.||:....||..||
pombe   591 STELSDIDLTRTLQSLSCARIRPLVMVPKSKKPSPDTMFYVNEKFTDKLYRVKINQIYLKEERQE 655

  Fly   673 VEHTINSVDEDRKLFLQAAIVRIMKARKVLKHNALIQEVLSLSKVSFTPNIAMIKKCVESLIDKQ 737
            .......|..||:..|||:|||:||.::.:||:.|:|.|::..|....|.::.:|..:|.|::|:
pombe   656 NSDVQEQVVRDRQFELQASIVRVMKQKEKMKHDDLVQYVINNVKDRGIPLVSDVKTAIEKLLEKE 720

  Fly   738 YIERTANSGDEYSYM 752
            |:||..|  |.|:|:
pombe   721 YLEREDN--DIYTYV 733

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul2NP_610117.1 Cullin 39..639 CDD:279260 125/615 (20%)
CULLIN 436..575 CDD:214545 41/138 (30%)
Cullin_Nedd8 680..745 CDD:214883 25/64 (39%)
pcu4NP_594195.1 COG5647 1..734 CDD:227934 164/730 (22%)
CULLIN 416..554 CDD:214545 42/141 (30%)
Cullin_Nedd8 663..730 CDD:214883 27/68 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53685
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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