DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul2 and cul-5

DIOPT Version :9

Sequence 1:NP_610117.1 Gene:Cul2 / 35420 FlyBaseID:FBgn0032956 Length:753 Species:Drosophila melanogaster
Sequence 2:NP_505616.2 Gene:cul-5 / 179413 WormBaseID:WBGene00000840 Length:765 Species:Caenorhabditis elegans


Alignment Length:804 Identity:203/804 - (25%)
Similarity:368/804 - (45%) Gaps:97/804 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VEFVDVWPRLRCIAESVITLTKVERSVWNTSFSDVYTLCV---AQPEPMAD---RLYGETKHFLE 66
            ::|.:.|.:...|..:::....|..:.|...|..||.:..   ..|..:.|   |...:..|...
 Worm     1 MQFDEEWSKADPIVHALLHQKSVTPAAWQDLFYHVYKITSWVDDGPLKIRDILTRCINDYVHEAN 65

  Fly    67 QHVQEMLAKKVLIEGECSHSNGGPDLLQRYYITWMEYSQGIKYLHQLYIYLNQQHIKKQKITDTE 131
            :.::.:.....|:.|              |...|..:.|....|...:..:::.. :::.:.:| 
 Worm    66 KRIRSLQTDGSLLIG--------------YIKEWNRFYQQANILPLPFKKIDESS-RRRSVPET- 114

  Fly   132 SFYGNLSSDAAEQMEIGELGLDIWRLYMIEYLSSELVRHILEGIAADRASNGTLDHHRVQIINGV 196
                       .:..|..:.|:.|...:...:|.:|:...|..:..:|..| .:|   .|.:.|:
 Worm   115 -----------PEESIRTVMLEKWNEIIFMNISEQLLVEALRLVKEERDGN-IID---AQNVIGI 164

  Fly   197 IHSFVEVQDYKKTGSLKLYQELFEGPMLEASGAYYTDEANKLLHRCSVSEYMQEVIRILEYESRR 261
            ..|||.:.|......|.:|::.||...:|.:..||......||:...|.|||....:.||.|.:|
 Worm   165 RESFVALNDRAGEDPLLVYRQSFERQFIEQTTEYYKKICGNLLNELGVLEYMVYADKKLEEEQQR 229

  Fly   262 AQKFLHVSSLPKLRKECEEKFINDRLGF---IYSECREMVSEERRQDLRNMYVVLKPIPDNLKSE 323
            |:::|.::| |...|..|:..|.....|   |.:||.::::.:..:.|:.:|.:::.....:.:.
 Worm   230 AKRYLEMNS-PTSGKHMEKAVIALVESFEDTILAECSKLIASKDVERLQRLYRLIRRTRSGIDTV 293

  Fly   324 L--ITTFLDHIKSEGLQTVSALKGENIHI---AFVENMLKVHHKYQELIADVFENDSLFLSALDK 383
            |  |.|   ||::|||..:.. ..||:..   .:|:.:|.:..|:..|:.:.|.:|:..|:|.||
 Worm   294 LKCIDT---HIRTEGLNDMRN-NAENLSTDPERYVQQLLLMFDKFSSLVREGFCDDARLLTARDK 354

  Fly   384 ACASVIN--------------RRPTERQPCRSAEYVAKYCDTLLKKS----KTCEAEIDQKLTNN 430
            |..:|:|              |..:....|  ||.:|.|||.||:|:    |....|||:||...
 Worm   355 AFRAVVNDSSIFKTEMMNKKGRTLSVESKC--AELLANYCDLLLRKTQLSKKLTSEEIDEKLNQV 417

  Fly   431 ITIFKYIEDKDVYQKFYSRLLAKRLIHEQSQSMDAEEGMINRLKQACGY--EFTNKLHRMFTDIS 493
            :.:.||:|:|||:.:|:...|::|||.|.|...:.||.|:.:|:: ||.  :..|||.||..||.
 Worm   418 LLVLKYVENKDVFMRFHRAHLSRRLILEMSADQEKEEMMVTKLRE-CGMPSDAVNKLSRMLQDIE 481

  Fly   494 VSVDLNNKFNTHLKDSNVDLGI--NLAIKVLQAGAWPLGSTQVIPFAVPQEFEKSIKMFEDYYHK 556
            ::.|:|:.|...|..:|.:..|  ::.:|||..|||..|.::.|.|::|:|.|..:...|.:|.|
 Worm   482 LNKDMNSSFKKALTGTNNNKSIADSINMKVLNGGAWGRGGSERIRFSLPRELEDFVPEMEAFYKK 546

  Fly   557 LFSGRKLTWLHHMCHGELKLSHLKKS-YIVTMQTYQMAIILLF--ETCDSLSCREIQNTLQLNDE 618
            ..:||||.|:||...|.:........ :.:...|:|||::..|  ...|.:|...::...:|.|.
 Worm   547 QHNGRKLCWMHHWSSGTMVFGTANGGRFDLECTTFQMAVLFCFNDRAHDKISLETLRLATELPDA 611

  Fly   619 TFQKHM-----QPIIESKLL-------NASSENLAGETRIELNLDY-------TNKRTKFKISSA 664
            ...:.:     .|.:..::|       ..::.:....|:..:|.|:       :.:|.|..:...
 Worm   612 ELNRTLLSLVAYPKMRYQILLCDVPSTTVTARDFTDSTKFLINHDFNVVKNGKSQQRGKVNLIGR 676

  Fly   665 LQKETPQEVEHTINSVDEDRKLFLQAAIVRIMKARKVLKHNALIQEVLSLSKVSFTPNIAMIKKC 729
            ||.......|....|:...|:|.:|..||:|:|.||......|..|::.:.|..|.||..:||:.
 Worm   677 LQLSLEANAEKEHESIVALRELRVQEGIVKILKTRKTYTLAQLTMELVEILKPLFIPNRKIIKEQ 741

  Fly   730 VESLIDKQYIERTANSGDEYSYMA 753
            ::.||:.:|:||.|:..:.:.|::
 Worm   742 IDWLIENKYMERRADDINTFVYIS 765

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul2NP_610117.1 Cullin 39..639 CDD:279260 165/650 (25%)
CULLIN 436..575 CDD:214545 54/142 (38%)
Cullin_Nedd8 680..745 CDD:214883 23/64 (36%)
cul-5NP_505616.2 Cullin 18..656 CDD:279260 169/676 (25%)
CULLIN 423..562 CDD:214545 53/139 (38%)
Cullin_Nedd8 692..759 CDD:214883 23/66 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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