DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul2 and cul-6

DIOPT Version :9

Sequence 1:NP_610117.1 Gene:Cul2 / 35420 FlyBaseID:FBgn0032956 Length:753 Species:Drosophila melanogaster
Sequence 2:NP_502412.1 Gene:cul-6 / 178214 WormBaseID:WBGene00000841 Length:729 Species:Caenorhabditis elegans


Alignment Length:768 Identity:223/768 - (29%)
Similarity:371/768 - (48%) Gaps:71/768 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VWPRLRCIAESVITLTKVERSVWNTSFSDVYTLCVA---------QPEPMADRLYGETKHFLEQH 68
            ||..|:.....:.....:.:..:...:..||.:|..         .||..::.||.:.::::..:
 Worm     6 VWGTLQDGLNLLYRREHMSKKYYMMLYDAVYNICTTTTLANSNNNSPEFASEFLYKQLENYIRTY 70

  Fly    69 VQEMLAKKVLIEGECSHSNGGPDLLQRYYITWMEYSQGIKYLHQLYIYLNQQHIKKQKITDTESF 133
            |   :|.:..|.. ||    |.:||.:..|.|..:....:..:.::.|||:..:.| |:.|..  
 Worm    71 V---IAIRDRISA-CS----GDELLGKCTIEWDNFKFSTRICNCIFQYLNRNFVSK-KVEDKN-- 124

  Fly   134 YGNLSSDAAEQMEIGELGLDIWRLYMIEYLSSELVRHILEGIAADRASNGTLDHHRVQIINGVIH 198
                    .|.:||.:|.||||:....:....:.:..|||.|..:|..:.....|    |:.|:.
 Worm   125 --------GEIVEIYKLALDIWKAEFFDNFKVKTIDAILELILLERCGSTINSTH----ISSVVE 177

  Fly   199 SFVEVQDYKKTGSLKLYQELFEGPMLEASGAYYTDEANKLLHRCSVSEYMQEVIRILEYESRRAQ 263
            ...|         |.:|:..||...|:|:..:|..|.  |..:.:|.|||..|...|..|..|::
 Worm   178 CLTE---------LDIYKVSFEPQFLDATKLFYKQEV--LNSKETVIEYMITVENRLFQEEYRSR 231

  Fly   264 KFLHVSSLPKLRKECEEKFINDRLGFIYSECREMVSEERRQDLRNMYVVLKPIPDNLKSELITTF 328
            ::|..|:...|...||...|:|||.|::||...::...:.:.|..||.:.:.:...|  |.:..:
 Worm   232 RYLGPSTNDLLIDSCESILISDRLKFLHSEFERLLEARKDEHLTRMYSLCRRVTHGL--EDLRVY 294

  Fly   329 LD-HIKSEGLQTVSAL-KGENIHIA---FVENMLKVHHKYQELIADVFENDSLFLSALDKACASV 388
            |: .|..||.:|:..| |...:...   ::..:|:||..|..||...|:.::||:.:||||....
 Worm   295 LEKRILKEGHETLQRLAKDSGLKTTPKEYITKLLEVHEIYFNLINKAFDRNALFMQSLDKASKDF 359

  Fly   389 INRR------PTERQPCRSAEYVAKYCDTLLKKSKTCEAEIDQKLTNNITIFKYIEDKDVYQKFY 447
            |...      |.:.:..|||:|:|:|||.||||:...:.|  ..|...:|:.|||.:|||:|.:|
 Worm   360 IEANAVTMLAPEKHRSTRSADYLARYCDQLLKKNSKVQDE--TALDKALTVLKYISEKDVFQLYY 422

  Fly   448 SRLLAKRLIHEQSQSMDAEEGMINRLKQACGYEFTNKLHRMFTDISVSVDLNNKFNTHLKDSNVD 512
            ....::|:|:..|.|.||||..|..|....|.|:|..|.:|..|..:|.||..:|    ||...:
 Worm   423 QNWFSERIINNSSASDDAEEKFITNLTATEGLEYTRNLVKMVEDAKISKDLTTEF----KDIKTE 483

  Fly   513 LGINLAIKVLQAGAWPLGSTQVIPFAVPQEFEKSIKMFEDYYHKLFSGRKLTWLHHMCHGELKLS 577
            ..|:..:.:...||||  |...|...:|:|....:|.|:.:|:...:||:|.|.:..|.||:...
 Worm   484 KSIDFNVILQTTGAWP--SLDQIKIILPRELSTILKEFDTFYNASHNGRRLNWAYSQCRGEVNSK 546

  Fly   578 HLKKSYIVTMQTYQMAIILLFETCDSLSCREIQNTLQLNDETFQK---HMQPIIESKLLNASSEN 639
            ..:|.|:..:...|:..:.||...||.:..:|...:::..::...   .:.|:|:..|:......
 Worm   547 AFEKKYVFIVTASQLCTLYLFNEQDSFTIEQISKAIEMTAKSTSAIVGSLNPVIDPVLVVDKGNE 611

  Fly   640 LAG---ETRIELNLDYTNKRTKFKISSALQKET-PQEVEHTINSVDEDRKLFLQAAIVRIMKARK 700
            ..|   :..:.||..|.||:.:..:::|::|.| .:|.:...|:|:.|||..::|.||||||.||
 Worm   612 KDGYPPDAVVSLNTKYANKKVRVDLTTAIKKATADRETDAVQNTVESDRKYEIKACIVRIMKTRK 676

  Fly   701 VLKHNALIQEVLSLSKVSFTPNIAMIKKCVESLIDKQYIERTANSGDEYSYMA 753
            .|.|..||.|::|..|..||||:.|||.|:|.||::.||.|:.|..:.|.|:|
 Worm   677 SLTHTLLINEIISQLKSRFTPNVQMIKICIEILIEQLYIRRSENEHNVYEYLA 729

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul2NP_610117.1 Cullin 39..639 CDD:279260 171/622 (27%)
CULLIN 436..575 CDD:214545 48/138 (35%)
Cullin_Nedd8 680..745 CDD:214883 34/64 (53%)
cul-6NP_502412.1 Cullin 10..596 CDD:279260 169/629 (27%)
CULLIN 411..547 CDD:214545 48/141 (34%)
Cullin_Nedd8 656..723 CDD:214883 35/66 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.830

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