DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cul2 and cul-1

DIOPT Version :9

Sequence 1:NP_610117.1 Gene:Cul2 / 35420 FlyBaseID:FBgn0032956 Length:753 Species:Drosophila melanogaster
Sequence 2:NP_499309.1 Gene:cul-1 / 176466 WormBaseID:WBGene00000836 Length:780 Species:Caenorhabditis elegans


Alignment Length:783 Identity:243/783 - (31%)
Similarity:404/783 - (51%) Gaps:60/783 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VWPRLRCIAESVITLTKVERSVWNTSFSDVY------TLCVAQPEPMADRLYGETK--------- 62
            ||.:|:...:.......:....:.|.::.||      ||..::.:....|....|.         
 Worm    16 VWKKLQDGLDVAYRRENMAPKDYMTLYTSVYDYCTSITLSTSRRDGEDGRAESSTPARTAGADFV 80

  Fly    63 -HFLEQHVQEMLAKKVLIEGECSHSNGGPDLLQRYYITWMEYSQGIKYLHQLYIYLNQQHIKKQK 126
             |.:.|.|:|.:...|:...|......|.|||:.|...|..:....|.:..::.|||:..|:::.
 Worm    81 GHEMYQRVEEYVKAYVIAVCEKGAELSGEDLLKYYTTEWENFRISSKVMDGIFAYLNRHWIRREL 145

  Fly   127 ITDTESFYGNLSSDAAEQMEIGELGLDIWRLYMIEYLSSELVRHILEGIAADRASNGTLDHHRVQ 191
            ....|:.|           .:..|.|.:|:..:...|..:::..:||.|.::|  .|::.:.|  
 Worm   146 DEGHENIY-----------MVYTLALVVWKRNLFNDLKDKVIDAMLELIRSER--TGSMINSR-- 195

  Fly   192 IINGVIHSFVEV------QDYKK---TGSLKLYQELFEGPMLEASGAYYTDE-ANKLLHRCSVSE 246
            .|:||:...||:      .|.||   |..|.:|:|.||...|||:..:||.| ||.|.:..:|::
 Worm   196 YISGVVECLVELGVDDSETDAKKDAETKKLAVYKEFFEVKFLEATRGFYTQEAANFLSNGGNVTD 260

  Fly   247 YMQEVIRILEYESRRAQKFLHVSSLPKLRKECEEKFINDRLGFIYSECREMVSEERRQDLRNMYV 311
            ||.:|...|..|..|.|.:|:.|:...|...||...|:::|.|:......::.::|..||..|:.
 Worm   261 YMIKVETRLNQEDDRCQLYLNSSTKTPLATCCESVLISNQLDFLQRHFGGLLVDKRDDDLSRMFK 325

  Fly   312 VLKPIPDNLKSELITTFLDHIKSEGLQTVS--ALKGENIHIAFVENMLKVHHKYQELIADVFEND 374
            :...:|:.| .||..:..:||..||.|.:.  |::.......:|:.:|:||.:||.|:...|:|:
 Worm   326 LCDRVPNGL-DELRKSLENHIAKEGHQALERVAMEAATDAKLYVKTLLEVHERYQSLVNRSFKNE 389

  Fly   375 SLFLSALDKACASVIN------RRPTERQPCRSAEYVAKYCDTLLKKSKTC--EAEIDQKLTNNI 431
            ..|:.:||||..|.||      |.|.:.|..:|||.:|:|||.||:||...  |||:::..|..:
 Worm   390 PGFMQSLDKAATSFINNNAVTKRAPPQAQLTKSAELLARYCDQLLRKSSKMPDEAELEELQTKIM 454

  Fly   432 TIFKYIEDKDVYQKFYSRLLAKRLIHEQSQSMDAEEGMINRLKQACGYEFTNKLHRMFTDISVSV 496
            .:||||:||||:.|||:::.:||||.|.|.|.:||...|.:||..||||:|.:|.:|..|..||.
 Worm   455 VVFKYIDDKDVFSKFYTKMFSKRLISELSASDEAEANFITKLKSMCGYEYTARLSKMVNDTQVSK 519

  Fly   497 DLNNKFNTHLKDSNVDLGINLAIKVLQAGAWPLGSTQVIPFAVPQEFEKSIKMFEDYYHKLFSGR 561
            ||...|.....|......:...:.||.:|:||...|  .|..:||:..|:|::|..:|::.|:||
 Worm   520 DLTADFKEKKADMLGQKSVEFNVLVLSSGSWPTFPT--TPITLPQQLSKTIEIFGQFYNEKFNGR 582

  Fly   562 KLTWLHHMCHGELKLSHLKKSYIVTMQTYQMAIILLFETCDSLSCREIQNTLQLNDETFQKHMQP 626
            :|||::....||:..:...|.|:.|..|.||..:|||...||.:..:|....::::::....:..
 Worm   583 RLTWVYSQSRGEITSTAFPKKYVFTATTAQMCTMLLFNEQDSYTVEQIAAATKMDEKSAPAIVGS 647

  Fly   627 IIESKLLNASSE-----NLAGETRIELNLDYTNKRTKFKISS-ALQKETPQEVEHTINSVDEDRK 685
            :|::.:|.|.:|     .:.....:.||..|.||:.:..:|. .::::..::.|:...:|:||||
 Worm   648 LIKNLVLKADTELQKEDEVPMTATVSLNKAYMNKKVRVDLSKFTMKQDAVRDTENVQKNVEEDRK 712

  Fly   686 LFLQAAIVRIMKARKVLKHNALIQEVLSLSKVSFTPNIAMIKKCVESLIDKQYIERTANSGDEYS 750
            ..:.|.||||||.||.::|..|:.||::.....|.|.:.|||:|:.|||:|:|:.||....|.|.
 Worm   713 SVISACIVRIMKTRKRVQHQQLMTEVITQLSGRFKPKVEMIKRCIGSLIEKEYMLRTEGQKDLYE 777

  Fly   751 YMA 753
            |:|
 Worm   778 YLA 780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cul2NP_610117.1 Cullin 39..639 CDD:279260 197/640 (31%)
CULLIN 436..575 CDD:214545 56/138 (41%)
Cullin_Nedd8 680..745 CDD:214883 31/64 (48%)
cul-1NP_499309.1 Cullin 18..677 CDD:279260 201/676 (30%)
CULLIN 459..599 CDD:214545 56/141 (40%)
Cullin_Nedd8 707..774 CDD:214883 31/66 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5647
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53685
OrthoDB 1 1.010 - - D1040292at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.830

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