DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2201 and ckb-4

DIOPT Version :9

Sequence 1:NP_001033932.2 Gene:CG2201 / 35417 FlyBaseID:FBgn0032955 Length:554 Species:Drosophila melanogaster
Sequence 2:NP_503573.1 Gene:ckb-4 / 184864 WormBaseID:WBGene00000514 Length:381 Species:Caenorhabditis elegans


Alignment Length:515 Identity:112/515 - (21%)
Similarity:184/515 - (35%) Gaps:203/515 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 SNATLEEIRHAAARICRDYLTGPWKVVTPESLVVKRISGGLSNFLYYVSLPDLNDYDELDEQKQQ 106
            |:..||::    ..:..|||.|.|.:|....:.|.:|:||.||.||.                  
 Worm    16 SDVILEKV----IELGSDYLRGGWALVEKSEVTVTQITGGQSNILYL------------------ 58

  Fly   107 QEDIIGATATVTNRSGVFIHDDESAAKAVGVTLMARELINNDDVADAAPGATQAHKRQRCDSNSR 171
                                                              ||.|..:...|:   
 Worm    59 --------------------------------------------------ATSASTKLSPDT--- 70

  Fly   172 ECSSSKRLHAPKQQPREVLLRIYGQTHGDHALESMITESVVFALLSERNYGPKLHGIFPGGRIEQ 236
                          |...|:||:.|     |...:.||:|||::||||..||||:|.|||||:|:
 Worm    71 --------------PSCFLIRIHRQ-----APSQVFTETVVFSVLSERGLGPKLYGFFPGGRLEE 116

  Fly   237 YIPARALTTAELGEQRILKRVAEKMGEIHSLNIPMSKEPDWIWNCMQRWVSGLESIVNGSVQTNQ 301
            ::|:|.|....:....|.::|.....:.|.:.:|:||....: ..::..:.|.::: .|.|....
 Worm   117 FLPSRTLDVDSIKLPEIARQVGSLYPKYHDIEVPISKSAGAL-KFIKENLEGYKAL-GGKVLKMC 179

  Fly   302 KSSVLKKQMELMRTFDYV-QEMA----WIRSIIDEGDYPVVFCHNDLQEGNILMRQPSAGQNERT 361
            ..||....|....|.:.: ||:|    |.: :.||   .:||.||||...|:|            
 Worm   180 PHSVKYDSMPSELTVEQIEQEIATFERWCK-VFDE---TIVFSHNDLAPLNVL------------ 228

  Fly   362 PRESISSLRSNFDETLGDSLDGNSNISDTETHKSRSVSPSPCPELDTTNDSALDSSFMADNEPDL 426
                                    .::||:                                 ::
 Worm   229 ------------------------ELNDTK---------------------------------EI 236

  Fly   427 IIIDFEYCAYNYRGYDLANHFIEWTFDYTNPQFPYFYHNSSNCATVQQRRDFIVNY--------- 482
            :.|||||.:||:||:||.....|..|||.:|..|..        .:.|  |::.|:         
 Worm   237 VFIDFEYSSYNWRGFDLCMFLCENAFDYRDPTPPGL--------VIDQ--DYMENHPNLQIFCEA 291

  Fly   483 -------LKKFHDDENYNITGQELMKVDA---EIQFFTMLSHLFWSLWSVINVTSAIEFG 532
                   :|..:..:.:.:|.....:|::   |.:||..|.::||::||:....:..|.|
 Worm   292 YIDTQYKMKTANPKQKFPLTEGRAAEVESLMLECKFFIPLVNMFWAVWSLRQHLAKYEIG 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2201NP_001033932.2 ChoK_euk 159..549 CDD:270705 93/398 (23%)
ckb-4NP_503573.1 PLN02236 31..369 CDD:177880 107/496 (22%)
ChoK_euk 43..370 CDD:270705 103/484 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167402
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1469912at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22603
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
76.810

Return to query results.
Submit another query.