DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lamp1 and CD68

DIOPT Version :9

Sequence 1:NP_610111.3 Gene:Lamp1 / 35411 FlyBaseID:FBgn0032949 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_001242.2 Gene:CD68 / 968 HGNCID:1693 Length:354 Species:Homo sapiens


Alignment Length:282 Identity:65/282 - (23%)
Similarity:116/282 - (41%) Gaps:39/282 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 NPLTSSSSTISTSSTTTEKPITT-RSTSTITPRSTTPSTESPSTTAPVISTTIAPQPYPQP---- 106
            :|.::|::|....||.|..|.|| ...:|:.|.|.:.:| ||..|:........|.|.|.|    
Human    92 HPTSNSTATSQGPSTATHSPATTSHGNATVHPTSNSTAT-SPGFTSSAHPEPPPPSPSPSPTSKE 155

  Fly   107 SIG--AWNTS---CIMLQMAAQLNFTYEAREGNFTTGLYNIPSNASVEDAECKSQTTQFI----- 161
            :||  .|...   |:.||...|:...|..:.|....|:..:..|.:.....|:......:     
Human   156 TIGDYTWTNGSQPCVHLQAQIQIRVMYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPY 220

  Fly   162 -HLIWGPETSKQSLIMYFNKSNDTTVLSFMQIHLALLPEDFPDAKENQTVQLITRSDGAFKTPEN 225
             ||.:|.....|..::|         ||:|.:...:   .||.|.: .|......|....:.|..
Human   221 GHLSFGFMQDLQQKVVY---------LSYMAVEYNV---SFPHAAQ-WTFSAQNASLRDLQAPLG 272

  Fly   226 MSYHCTRVQKINMTETLDAEQLIGWISVSHVQVEAFRRANDTGFSVGHDCDSSETSDVVPIAVGI 290
            .|:.|:. ..|.::..:..:.|       .::::|.:..:...|.....| .|:.|.::|:.:|:
Human   273 QSFSCSN-SSIILSPAVHLDLL-------SLRLQAAQLPHTGVFGQSFSC-PSDRSILLPLIIGL 328

  Fly   291 ALAALILVVLISYLCARRRSTS 312
            .|..|:.:|||::...|||.::
Human   329 ILLGLLALVLIAFCIIRRRPSA 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lamp1NP_610111.3 Lamp <77..318 CDD:279622 55/251 (22%)
CD68NP_001242.2 Mucin-like 23..140 16/48 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 40..162 22/70 (31%)
2 X 30 AA tandem repeats 70..129 12/36 (33%)
Lamp 85..319 CDD:307462 54/249 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4818
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11506
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
43.870

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