DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lamp1 and Lamp3

DIOPT Version :9

Sequence 1:NP_610111.3 Gene:Lamp1 / 35411 FlyBaseID:FBgn0032949 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_001012015.1 Gene:Lamp3 / 303801 RGDID:1307928 Length:408 Species:Rattus norvegicus


Alignment Length:325 Identity:76/325 - (23%)
Similarity:132/325 - (40%) Gaps:74/325 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 NVSDLFLEQANPLTSSSSTIST--SSTTTEKPI-TTRST----STITPRST-------------T 81
            :.|..|:...|...::|||..|  |.:.|..|. |||::    :.||.|||             |
  Rat   104 STSYTFVRTNNSHMTASSTEDTIGSGSITHLPFPTTRASLAAVNHITGRSTQLGGQTTLPKALFT 168

  Fly    82 PSTESPSTTAPVIST-------------TIAPQP-YPQPSIGAWNTS--------------CIML 118
            ||.||.:|..|.:||             |.:..| .|:|:...|::.              ||..
  Rat   169 PSHESTTTQRPTLSTIVSELTPTGKDRSTTSSVPLVPRPTFVTWSSPAKIGTYEVLNGSRLCIKA 233

  Fly   119 QMAAQLNFTYEAREGNFTTGLYNIPSNASVEDAECKSQTTQ-FIHLIWGPETSKQSLIMYFNKSN 182
            :|...| ...|....:.|...:||..:.:....:|.||.:. |::...|      |:.:.|.|..
  Rat   234 EMGIAL-IVQEKGLDSATQRHFNIDPSLTHASGKCGSQNSNLFLNFQGG------SVNVTFTKEE 291

  Fly   183 DTTVLSFMQIHLALLPEDFPDAKENQTVQLITRSDGAFKTPENMSYHCTRVQKINMTETLDAEQL 247
            :...:|.:..:|.:  .:.....:.::..::      |:|....|:.|...|.|.::..|..:.:
  Rat   292 NLYYVSEVGAYLTI--SNTEKTYQGKSTMMM------FETVVGHSFKCVSEQSIQLSAQLQMKTM 348

  Fly   248 IGWISVSHVQVEAFRRANDTGFSVGHDCDSSETSDVVPIAVGIALAALILVVLISYLCARRRSTS 312
                   ::.::||....|: |.:..:|.|..|. |:|: |||.:..|.:|.|..|...:||.:|
  Rat   349 -------NIHLQAFDFEGDS-FGIVDECLSDYTV-VLPV-VGIIVVVLCVVGLGIYKIRQRRQSS 403

  Fly   313  312
              Rat   404  403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lamp1NP_610111.3 Lamp <77..318 CDD:279622 61/278 (22%)
Lamp3NP_001012015.1 Lamp 216..358 CDD:396046 27/163 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 41 1.000 Domainoid score I12171
eggNOG 1 0.900 - - E1_KOG4818
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11506
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.870

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