DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lamp1 and Lamp1

DIOPT Version :9

Sequence 1:NP_610111.3 Gene:Lamp1 / 35411 FlyBaseID:FBgn0032949 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_036989.1 Gene:Lamp1 / 25328 RGDID:2989 Length:407 Species:Rattus norvegicus


Alignment Length:328 Identity:91/328 - (27%)
Similarity:138/328 - (42%) Gaps:84/328 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 NVSDLFLEQANPLTSSSSTISTSSTTTEKP---ITTRSTSTI-------------------TPRS 79
            |:||   .|..|..||....:..|||..|.   .|.|..|.|                   .|.|
  Rat   116 NLSD---TQFFPNASSKGPDTVDSTTDIKADINKTYRCVSDIRVYMKNVTIVLWDATIQAYLPSS 177

  Fly    80 T-------------TPSTESPSTTAPVISTTIAPQPYPQPSIGAWNT-----SCIMLQMAAQLNF 126
            .             :|:|..||.:.|::.|        .||:..:|.     :|::..||.|||.
  Rat   178 NFSKEETRCPQDQPSPTTGPPSPSPPLVPT--------NPSVSKYNVTGDNGTCLLASMALQLNI 234

  Fly   127 TYEAREGNFTTGLYNI-PSNASVEDAECKSQTTQFIHLIWGPETSKQSLIMYFNKSNDTTVLSFM 190
            ||..::....|..:|| ||     |....:...|.:.|..|.::....|....|.::....|..:
  Rat   235 TYMKKDNTTVTRAFNINPS-----DKYSGTCGAQLVTLKVGNKSRVLELQFGMNATSSLFFLQGV 294

  Fly   191 QIHLALLPEDFPDAKE------NQTVQLITRSDGAFKTPENMSYHCTRVQKINMTETLDAEQLIG 249
            |:::.|     |||.|      |.:::.:..|.|       .||.|...:.|.:::.|.      
  Rat   295 QLNMTL-----PDAIEPTFSTSNYSLKALQASVG-------NSYKCNSEEHIFVSKALA------ 341

  Fly   250 WISVSHVQVEAFRRANDTGFSVGHDCDSSETSDVVPIAVGIALAALILVVLISYLCARRRSTSRG 314
             ::|..|||:|||..:|...|| .:|.....:.::|||||.|||.|:|:|||:||..|:||.: |
  Rat   342 -LNVFSVQVQAFRVESDRFGSV-EECVQDGNNMLIPIAVGGALAGLVLIVLIAYLIGRKRSHA-G 403

  Fly   315 YMS 317
            |.:
  Rat   404 YQT 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lamp1NP_610111.3 Lamp <77..318 CDD:279622 76/266 (29%)
Lamp1NP_036989.1 First lumenal domain 22..189 25/107 (23%)
Lamp 107..407 CDD:279622 91/328 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 180..211 11/35 (31%)
Hinge 190..219 10/33 (30%)
Second lumenal domain 220..371 41/157 (26%)
TM_EGFR-like 372..401 CDD:213052 13/25 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 42 1.000 Domainoid score I12104
eggNOG 1 0.900 - - E1_KOG4818
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 83 1.000 Inparanoid score I5088
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002671
OrthoInspector 1 1.000 - - otm46378
orthoMCL 1 0.900 - - OOG6_104018
Panther 1 1.100 - - O PTHR11506
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.820

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