DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lamp1 and Lamp1

DIOPT Version :10

Sequence 1:NP_610111.3 Gene:Lamp1 / 35411 FlyBaseID:FBgn0032949 Length:318 Species:Drosophila melanogaster
Sequence 2:NP_036989.1 Gene:Lamp1 / 25328 RGDID:2989 Length:407 Species:Rattus norvegicus


Alignment Length:328 Identity:91/328 - (27%)
Similarity:138/328 - (42%) Gaps:84/328 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 NVSDLFLEQANPLTSSSSTISTSSTTTEKP---ITTRSTSTI-------------------TPRS 79
            |:||   .|..|..||....:..|||..|.   .|.|..|.|                   .|.|
  Rat   116 NLSD---TQFFPNASSKGPDTVDSTTDIKADINKTYRCVSDIRVYMKNVTIVLWDATIQAYLPSS 177

  Fly    80 T-------------TPSTESPSTTAPVISTTIAPQPYPQPSIGAWNT-----SCIMLQMAAQLNF 126
            .             :|:|..||.:.|::.|        .||:..:|.     :|::..||.|||.
  Rat   178 NFSKEETRCPQDQPSPTTGPPSPSPPLVPT--------NPSVSKYNVTGDNGTCLLASMALQLNI 234

  Fly   127 TYEAREGNFTTGLYNI-PSNASVEDAECKSQTTQFIHLIWGPETSKQSLIMYFNKSNDTTVLSFM 190
            ||..::....|..:|| ||     |....:...|.:.|..|.::....|....|.::....|..:
  Rat   235 TYMKKDNTTVTRAFNINPS-----DKYSGTCGAQLVTLKVGNKSRVLELQFGMNATSSLFFLQGV 294

  Fly   191 QIHLALLPEDFPDAKE------NQTVQLITRSDGAFKTPENMSYHCTRVQKINMTETLDAEQLIG 249
            |:::.|     |||.|      |.:::.:..|.|       .||.|...:.|.:::.|.      
  Rat   295 QLNMTL-----PDAIEPTFSTSNYSLKALQASVG-------NSYKCNSEEHIFVSKALA------ 341

  Fly   250 WISVSHVQVEAFRRANDTGFSVGHDCDSSETSDVVPIAVGIALAALILVVLISYLCARRRSTSRG 314
             ::|..|||:|||..:|...|| .:|.....:.::|||||.|||.|:|:|||:||..|:||.: |
  Rat   342 -LNVFSVQVQAFRVESDRFGSV-EECVQDGNNMLIPIAVGGALAGLVLIVLIAYLIGRKRSHA-G 403

  Fly   315 YMS 317
            |.:
  Rat   404 YQT 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lamp1NP_610111.3 Lamp 106..262 CDD:480752 42/167 (25%)
Lamp1NP_036989.1 First lumenal domain 22..189 25/107 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 180..211 11/35 (31%)
Hinge 190..219 10/33 (30%)
Lamp 209..355 CDD:460152 36/152 (24%)
Second lumenal domain 220..371 41/157 (26%)
TM_EGFR-like 372..401 CDD:213052 13/25 (52%)

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