DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17571 and svh-1

DIOPT Version :9

Sequence 1:NP_001286096.1 Gene:CG17571 / 35409 FlyBaseID:FBgn0259998 Length:258 Species:Drosophila melanogaster
Sequence 2:NP_501379.2 Gene:svh-1 / 182375 WormBaseID:WBGene00006620 Length:951 Species:Caenorhabditis elegans


Alignment Length:239 Identity:73/239 - (30%)
Similarity:118/239 - (49%) Gaps:25/239 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 RIVNGEDVDIENYPYQVSV--QTTKGSHFCGGSLIDSETVLTAAHCM-QSYAASELQVRVG--ST 89
            |:|.|.:.....:|:..::  :.|| :|.||.|::|...::|||||. :....|..:|.||  ..
 Worm   712 RVVGGFETVPGAFPWTAALRNKATK-AHHCGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDN 775

  Fly    90 SRSSGGE-VVTVRAFKYHEGYNSKLMINDVAIIKLSSP-VRQTSKIRAIELADSEAV--SGTNAV 150
            :::.|.| :..::...::..|.. :..:|:||:::..| :......:.|.|...:.|  .|...|
 Worm   776 NQTDGNEQIFYLQRIHFYPLYKD-IFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCV 839

  Fly   151 VSGWGTTCFLFCSSPDTLQKVEVDLLHYKDCAADTYNYGSDSILETMVCATGEKK---DACQGDS 212
            |||||:....:.   :.||...:.:::..||...:..|.|.|  .:..|| |..:   |:|||||
 Worm   840 VSGWGSMGLRYA---ERLQAALIPIINRFDCVNSSQIYSSMS--RSAFCA-GYLEGGIDSCQGDS 898

  Fly   213 GGPLVADNK-----LVGVVSWGSGCAWTGYPGVYADVASLRSWI 251
            |||.....:     |.||:|||.|||....||:|..||...|||
 Worm   899 GGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSWI 942

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17571NP_001286096.1 Tryp_SPc 30..251 CDD:214473 71/237 (30%)
Tryp_SPc 31..254 CDD:238113 72/238 (30%)
svh-1NP_501379.2 KR 227..306 CDD:214527
LDLa 320..355 CDD:238060
PAN_AP_HGF 373..434 CDD:238532
LDLa 558..590 CDD:197566
SRCR_2 599..681 CDD:382996
Tryp_SPc 713..945 CDD:238113 72/238 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.