DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp39D and tspan34a

DIOPT Version :10

Sequence 1:NP_523612.3 Gene:Tsp39D / 35405 FlyBaseID:FBgn0032943 Length:235 Species:Drosophila melanogaster
Sequence 2:NP_001038906.2 Gene:tspan34a / 751731 ZFINID:ZDB-GENE-060825-202 Length:243 Species:Danio rerio


Alignment Length:240 Identity:70/240 - (29%)
Similarity:120/240 - (50%) Gaps:27/240 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VKYLTFFCNLLFALTGLLIFLVGGMVQLNYAHYSNFVSDHVWTAP----------IILMIVGAAV 63
            :|.:.|..|.:..|.|..:..||..|.::......|: :|:..||          .:|:.|||.:
Zfish     7 LKVMMFVFNGIIFLAGAAVLAVGIWVAVDRVSLLGFL-EHIEDAPPELAQLANIGYLLIGVGAFL 70

  Fly    64 AVICFLGCCGALKESSCMILSFALLAVVIFLFEIGLGLAGY-----VKHTGLHQIMESQFNSTMQ 123
            |::.|||||||:|||.||:|:|.::.::|||.|:...:..:     |:.| |::|.:....|...
Zfish    71 AIMGFLGCCGAVKESKCMLLTFFIIVLIIFLVEVAAAVVLFVFEPVVQET-LNEIGQKVAKSIKD 134

  Fly   124 HYKERADYRDAWTLLQTELDCCGINGPNDW---ETVYRNSTLPAACCSVINLSEAKECTNTHATQ 185
            :|.:...:...|.....||.|||.|...|:   ..|...|..|..|||    |.::.|....|..
Zfish   135 NYGKDEPFSSIWNTTMNELKCCGYNNYTDFSGSNFVEETSMYPEKCCS----SGSQRCDERAAED 195

  Fly   186 ---HGCLQKLLEILDSKTLILASVVLGVAGIQMLTILFACCLYRS 227
               .||.:.|:::::...|:||.|.||:|.:::..::.:..||::
Zfish   196 AVIAGCFRTLVKLIEDNALLLAGVALGIAALEIAAMVVSMILYKN 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp39DNP_523612.3 Tetraspanin 9..226 CDD:459767 69/237 (29%)
tetraspanin_LEL 131..>167 CDD:351888 11/38 (29%)
tspan34aNP_001038906.2 Tetraspanin 7..239 CDD:459767 69/237 (29%)
tetraspanin_LEL <134..213 CDD:239401 21/82 (26%)

Return to query results.
Submit another query.