DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp39D and Tsp42Eb

DIOPT Version :9

Sequence 1:NP_523612.3 Gene:Tsp39D / 35405 FlyBaseID:FBgn0032943 Length:235 Species:Drosophila melanogaster
Sequence 2:NP_724525.1 Gene:Tsp42Eb / 59177 FlyBaseID:FBgn0042086 Length:222 Species:Drosophila melanogaster


Alignment Length:243 Identity:60/243 - (24%)
Similarity:116/243 - (47%) Gaps:40/243 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LTCV----KYLTFFCNLLFALTGLLIFLVGGMVQLNYAHYSNFVSD-HVWTAPIILMIVGAAVAV 65
            :.|:    |||.:..||:|...|:|:.:||.::.....:::.|... :..|.||.::::|:...|
  Fly     1 MNCLSAMFKYLLYLLNLVFVAGGILLIVVGSIMLSTMGNFTAFDGGVNTQTIPICIIVIGSVTFV 65

  Fly    66 ICFLGCCGALKESSCMILSFALLAVVIFLFEIGLGLAGYVKHTGLHQIMESQFNSTMQHYKERA- 129
            :.|.||||.::|::|....:|:..:::|..::.|.:..:..:        .:|.|:|....::| 
  Fly    66 VAFFGCCGTIRENACCTTIYAICMLILFGLQLALSIWIFAAN--------DKFLSSMGKAVDKAW 122

  Fly   130 DYRDA-----WTLLQTELDCCGINGPNDWETVYRNSTLPAACCSVINLSEAKECTNTHATQHGCL 189
            |..:|     ...||....|||..|...:|||      |::||...:.::..| ...::.:.||.
  Fly   123 DENNAAQGYPMDALQLAFSCCGNTGYQQYETV------PSSCCGYKDRTKVCE-AEIYSQRPGCR 180

  Fly   190 QKLLEILDSKT-------LILASVVLGVAGIQMLTILFACCLYRSFRR 230
            |:.::...|.|       ||:|...||:       .:.:|||..:.|:
  Fly   181 QEFVDFWASNTDLIRWSSLIIALFELGI-------FIMSCCLASAMRK 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp39DNP_523612.3 Tetraspannin 8..227 CDD:278750 59/236 (25%)
tetraspanin_LEL 104..200 CDD:239401 23/101 (23%)
Tsp42EbNP_724525.1 Tetraspannin 8..219 CDD:278750 58/232 (25%)
tetraspanin_LEL 104..191 CDD:239401 23/101 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.