DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp39D and lbm

DIOPT Version :9

Sequence 1:NP_523612.3 Gene:Tsp39D / 35405 FlyBaseID:FBgn0032943 Length:235 Species:Drosophila melanogaster
Sequence 2:NP_001260757.1 Gene:lbm / 35623 FlyBaseID:FBgn0016032 Length:208 Species:Drosophila melanogaster


Alignment Length:226 Identity:49/226 - (21%)
Similarity:88/226 - (38%) Gaps:58/226 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 LTGLLIFLVGGMVQLNYAHYS------NFVSDHVWTAPIILMIVGAAVAVICFLGCCGALKE--- 77
            |..:|.||..|.:  .:..|:      .||        |...|..:.:.|...||...|::|   
  Fly    15 LNAVLGFLAAGAI--GWIAYNADTETEEFV--------IAAYIACSLILVFALLGIFAAIRESVV 69

  Fly    78 ----SSCMILSFALLAVV---IFLFEIGLGLAGYVKHTGLHQIMESQFNSTMQHYKERADYRDAW 135
                |:..:|..|:|.:|   :||.|                 .:.:....|.....:|:..|: 
  Fly    70 LTATSAVFLLILAILQIVSTCLFLHE-----------------FDVKSGRDMVEVAWQANNMDS- 116

  Fly   136 TLLQTELDCCGINGPNDWETVYRNSTLPAACCSVINLSEAKECTNTHATQHGCLQKLLEILDSKT 200
              ||.:.:|||.:...|:  ::.:..:|.:|.:.:      :.|..|....||::|:....:|..
  Fly   117 --LQQKHECCGQSSAQDY--IHLSLLIPPSCYADL------QQTPDHLYLDGCIEKVQSFYESDK 171

  Fly   201 L--ILASVVLGVAGIQMLTILFACCLYRSFR 229
            |  |:.|.||  ...:::....|..|..||:
  Fly   172 LRFIIVSWVL--VAFELICFALAVFLAISFK 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp39DNP_523612.3 Tetraspannin 8..227 CDD:278750 47/222 (21%)
tetraspanin_LEL 104..200 CDD:239401 17/95 (18%)
lbmNP_001260757.1 Tetraspannin 8..198 CDD:278750 47/222 (21%)
tetraspanin_LEL <109..169 CDD:239401 15/70 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19282
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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