DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp39D and cd53

DIOPT Version :10

Sequence 1:NP_523612.3 Gene:Tsp39D / 35405 FlyBaseID:FBgn0032943 Length:235 Species:Drosophila melanogaster
Sequence 2:XP_002942834.1 Gene:cd53 / 100496085 XenbaseID:XB-GENE-868554 Length:228 Species:Xenopus tropicalis


Alignment Length:233 Identity:68/233 - (29%)
Similarity:116/233 - (49%) Gaps:13/233 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASGGLTCVKYLTFFCNLLFALTGLLIFLVGGMVQLNYAHYSNFVSDHVWTAPIILMIVGAAVAV 65
            |||..:..:|||.|..|.||.:||..|..:|....:|..:.....::...|....|:.:|..:.|
 Frog     1 MASNFVNTLKYLMFAFNFLFWVTGCSIIAIGIYFVVNNIYGDLLTNNPSLTVGNALIAIGIIIMV 65

  Fly    66 ICFLGCCGALKESSCMILSFALLAVVIFLFEIGLGLAGYVKHTGLHQIMESQFNSTM-QHYKERA 129
            ..||||.||:||:.|::|:|.:|.::|.|.|:.:.:..:|....|...:..:..|:. |:.|:.:
 Frog    66 FGFLGCMGAIKENKCLLLTFFILLLLILLAEVIMAILLFVYEKQLDNYVRDRLTSSFEQNLKQNS 130

  Fly   130 DYRDAWTLLQTELDCCGINGPNDWETVYRNSTLPAACCSVINLSEA-KECTNTHATQHGCLQKLL 193
            .  :.|.::|..|.||||||..||:     ..:|.:||:    |.| .:|:.....:.||.:.|.
 Frog   131 S--ETWNIIQRNLQCCGINGTKDWK-----DNIPNSCCA----SNANSKCSQADLFKMGCSEALK 184

  Fly   194 EILDSKTLILASVVLGVAGIQMLTILFACCLYRSFRRS 231
            ...:...|.:....:.::.|::|.:.||..||....||
 Frog   185 NWFEKNFLYVGVGTICISVIEVLGMSFALTLYCHISRS 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp39DNP_523612.3 Tetraspanin 9..226 CDD:459767 62/218 (28%)
tetraspanin_LEL 131..>167 CDD:351888 12/35 (34%)
cd53XP_002942834.1 Tetraspanin 9..217 CDD:459767 62/218 (28%)
tetraspanin_LEL 104..195 CDD:351888 26/101 (26%)

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