DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dimm and Twist1

DIOPT Version :9

Sequence 1:NP_001260674.1 Gene:dimm / 35404 FlyBaseID:FBgn0023091 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_445982.1 Gene:Twist1 / 85489 RGDID:621455 Length:203 Species:Rattus norvegicus


Alignment Length:178 Identity:54/178 - (30%)
Similarity:79/178 - (44%) Gaps:25/178 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 SSRPVRRATRRTSQLSNNTYDLEMTDSSS--------QSDDTSGGGGSSNGGGSTTNTGHPSGCS 101
            ||.||..|   ...|||:..:.:....:|        :|...|.||  |.|.|..|..|...|..
  Rat     6 SSSPVSPA---DDSLSNSEEEPDRQQPASGKRGARKRRSSRRSAGG--SAGPGGATGGGIGGGDE 65

  Fly   102 LGGQGPSGRGRVQQASSGACPSTIAPNSTSSNSSNANGNASRRRKGALNAKERNMRRLESNERER 166
            .|......||:......|.     |........|::.|.:.:      :.:|...:|:.:|.|||
  Rat    66 PGSPAQGKRGKKSAGGGGG-----AGGGGGGGGSSSGGGSPQ------SYEELQTQRVMANVRER 119

  Fly   167 MRMHSLNDAFQSLREVIPHVEMERRLSKIETLTLAKNYIINLTHIILS 214
            .|..|||:||.:||::||.:..: :||||:||.||..||..|..::.|
  Rat   120 QRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQS 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dimmNP_001260674.1 HLH 154..208 CDD:238036 25/53 (47%)
Twist1NP_445982.1 HLH 110..160 CDD:278439 25/50 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.