DRSC/TRiP Functional Genomics Resources

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Protein Alignment dimm and Neurod1

DIOPT Version :10

Sequence 1:NP_523611.1 Gene:dimm / 35404 FlyBaseID:FBgn0023091 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_062091.1 Gene:Neurod1 / 29458 RGDID:3165 Length:357 Species:Rattus norvegicus


Alignment Length:246 Identity:66/246 - (26%)
Similarity:98/246 - (39%) Gaps:61/246 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 RRKGALNAK------ER-NMRRLESNERERMRMHSLNDAFQSLREVIPHVEMERRLSKIETLTLA 201
            :|:|....|      || .:||:::|.|||.|||.||.|..:||:|:|.....::|||||||.||
  Rat    82 KRRGPKKKKMTKARLERFKLRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLA 146

  Fly   202 KNYIINLTHIILSKRNEEAAAL---------ELNSGAVGGVLLSN---------------LSSES 242
            ||||..|:.|:.|.::.:..:.         :..:..|.|.|..|               |.:.|
  Rat   147 KNYIWALSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNPDMPPHLPTAS 211

  Fly   243 GG-PV------ASGIPANSNAATICFEDTLASGGAFDC-----AILAATDGSLLNAATVTTSPAM 295
            .. ||      :.|:|:....       |:.|...|..     |..||.:....:..|..|||:.
  Rat   212 ASFPVHPYSYQSPGLPSPPYG-------TMDSSHVFHVKPPPHAYSAALEPFFESPLTDCTSPSF 269

  Fly   296 QSIQSQAIHL----------QTPMEQQQQQASHLPHHQQA-MHGHGHLGAS 335
            ....|..:.:          .|..|:......|.|....| ...||.:.:|
  Rat   270 DGPLSPPLSINGNFSFKHEPSTEFEKNYAFTMHYPAATLAGPQSHGSIFSS 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dimmNP_523611.1 bHLH_TS_dimmed_like 157..216 CDD:381555 32/58 (55%)
Neurod1NP_062091.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..94 3/11 (27%)
bHLH_TS_NeuroD1 75..160 CDD:381562 36/77 (47%)
Nuclear localization signal. /evidence=ECO:0000255 87..93 1/5 (20%)
Neuro_bHLH 160..284 CDD:463621 21/130 (16%)

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