DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dimm and Ascl2

DIOPT Version :10

Sequence 1:NP_523611.1 Gene:dimm / 35404 FlyBaseID:FBgn0023091 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_113691.1 Gene:Ascl2 / 24209 RGDID:2159 Length:260 Species:Rattus norvegicus


Alignment Length:219 Identity:62/219 - (28%)
Similarity:87/219 - (39%) Gaps:42/219 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 SGGGGSSNGGGSTTNTGHPSGCSLGGQGPSGRGRVQQASSGACPSTIAPNSTSSNSSNANGNASR 143
            |.|......|....|.....|.:|....|:..|     .:|||.:...|.|......     :.|
  Rat    51 SCGAPKPVAGAPALNASLMDGGALPRLVPTSSG-----VAGACTARRRPPSPELLRC-----SRR 105

  Fly   144 RRKGALNAKERNMRRLESNERERMRMHSLNDAFQSLREVIPHVEMERRLSKIETLTLAKNYIINL 208
            ||.||..|...:......|||||.|:..:|..||:||:.:||....::|||:|||..|..||..|
  Rat   106 RRSGATEASSSSAAVARRNERERNRVKLVNLGFQALRQHVPHGGANKKLSKVETLRSAVEYIRAL 170

  Fly   209 THIILSKRNEEAAALELNSGAVGGVLL------------------SNLSSESGGPVASGI--PAN 253
            .. :|::.:...|||.      ||:|.                  ::||..|..|...|.  ||:
  Rat   171 QR-LLAEHDAVRAALS------GGLLTPATRPSDVCTQPSASPASASLSCTSTSPDRLGCSEPAS 228

  Fly   254 SNAA-----TICFEDTLASGGAFD 272
            ..:|     :.|..:|...|..||
  Rat   229 PRSAYSSEDSSCEGETYPMGQMFD 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dimmNP_523611.1 bHLH_TS_dimmed_like 157..216 CDD:381555 24/58 (41%)
Ascl2NP_113691.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 85..126 12/45 (27%)
bHLH_TS_ASCL2_Mash2 128..180 CDD:381586 20/52 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 191..239 8/47 (17%)

Return to query results.
Submit another query.