DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr39 and dsf

DIOPT Version :9

Sequence 1:NP_476932.1 Gene:Hr39 / 35398 FlyBaseID:FBgn0261239 Length:808 Species:Drosophila melanogaster
Sequence 2:NP_001260109.1 Gene:dsf / 33823 FlyBaseID:FBgn0015381 Length:691 Species:Drosophila melanogaster


Alignment Length:684 Identity:151/684 - (22%)
Similarity:213/684 - (31%) Gaps:303/684 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   365 GISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGP----CQVSISTR 425
            |.:..:|::.||.:|||:.||.||||:||:.|.|||||::...:.|.|...|.    |.|..:.|
  Fly     2 GTAGDRLLDIPCKVCGDRSSGKHYGIYSCDGCSGFFKRSIHRNRIYTCKATGDLKGRCPVDKTHR 66

  Fly   426 KKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPNSMLSPLLSPD------QAAAAAAA 484
            .:|.|||..||.|..|..:|::.:  ||.|              .|.|.|.      .|||||||
  Fly    67 NQCRACRLAKCFQSAMNKDAVQHE--RGPR--------------KPKLHPQLHHHHHHAAAAAAA 115

  Fly   485 ------------------------AAVA------------------------------------- 488
                                    ||||                                     
  Fly   116 AHHAAAAHHHHHHHHHAHAAAAHHAAVAAAAASGLHHHHHAMPVSLVTNVSASFNYTQHISTHPP 180

  Fly   489 ---------------SQQQP-------------HQRL----HQLNG------FGGV--------- 506
                           :||.|             ||..    |..:|      .|||         
  Fly   181 APAAPPSGFHLTASGAQQGPAPPAGHLHHGGAGHQHATAFHHPGHGHALPAPHGGVVSNPGGNSS 245

  Fly   507 -----------PIP----------------------------CSTSLP-------ASPSLAGTSV 525
                       |.|                            .|||.|       :|||....:.
  Fly   246 AISGSGPGSTLPFPSHLLHHNLIAEAASKLPGITATAVAAVVSSTSTPYASAAQTSSPSSNNHNY 310

  Fly   526 KSEEMAET-------------GKQSLRTGSVPPLLQEIMDVEHLWQYTDAELARINQPLSAFASG 577
            .|...:.:             |::.|..||..|.    ::||     |:......:.||||   |
  Fly   311 SSPSPSNSIQSISSIGSRSGGGEEGLSLGSESPR----VNVE-----TETPSPSNSPPLSA---G 363

  Fly   578 SSSSSSSSGTSSGA--HAQL--------TNP-----LLASAGLSSNGENANPDLIAH-------- 619
            |.|.:.:..||||:  |.|:        |.|     |:..|..::|..|.|.:...|        
  Fly   364 SISPAPTLTTSSGSPQHRQMSRHSLSEATTPPSHASLMICASNNNNNNNNNNNNGEHKQSSYTSG 428

  Fly   620 ------------------LCNVA------------------------------------DHR--- 627
                              .||.|                                    |.|   
  Fly   429 SPTPTTPTPPPPRSGVGSTCNTASSSSGFLELLLSPDKCQELIQYQVQHNTLLFPQQLLDSRLLS 493

  Fly   628 -----------LYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSID---TPGEIKM 678
                       |:..|:|.|.|..|:.:|.:||..||..||.||.|.:....:|.   ||    :
  Fly   494 WEMLQETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTP----I 554

  Fly   679 SQGRKITLSQAKSNGLQTCIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTTELQEAVKVREC 743
            .:...|.....:....||.::.:..:....|::..|..|...||.|.|...:|..|.:...|...
  Fly   555 LESPLIRERVLQDEATQTEMKTIQEILCRFRQITPDGSEVGCMKAIALFAPETAGLCDVQPVEML 619

  Fly   744 QEKALQSLQAYTLAHYPDTPSKFGELLLRIPDLQ 777
            |::|...|..:....||...::||.|||.:|.|:
  Fly   620 QDQAQCILSDHVRLRYPRQATRFGRLLLLLPSLR 653

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr39NP_476932.1 NR_DBD_Lrh-1_like 376..468 CDD:143541 36/95 (38%)
NR_LBD_F2 617..779 CDD:132728 50/240 (21%)
dsfNP_001260109.1 NR_DBD_TLX 5..98 CDD:143537 39/108 (36%)
NR_LBD_Tlx_PNR_like 467..671 CDD:132748 46/191 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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