DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8679 and lem-3

DIOPT Version :9

Sequence 1:NP_610099.1 Gene:CG8679 / 35395 FlyBaseID:FBgn0032934 Length:704 Species:Drosophila melanogaster
Sequence 2:NP_492539.2 Gene:lem-3 / 172792 WormBaseID:WBGene00002276 Length:704 Species:Caenorhabditis elegans


Alignment Length:743 Identity:170/743 - (22%)
Similarity:274/743 - (36%) Gaps:218/743 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 LHIASIYGRT---ELVRMLLERGACADLADEDNKLPVHYAIEECHFEVLQLL---------RDHI 137
            ||..:....|   :..|.||||||..:..|.|...|:|||....:..:.|||         .|.:
 Worm    32 LHYLAASSSTTSVDAARTLLERGANVNAIDRDGATPLHYACTHDNVAMAQLLLTFGADPMSADKL 96

  Fly   138 --------------FRERQIQKKQQQRV----------------------QVVDALTPN------ 160
                          |..|..:...:||:                      |.|..|.|.      
 Worm    97 GRTAYSIAKGNTLRFLRRYKKSSNRQRLGFFRRFFACHSRNETFFIVRNNQEVAPLRPTALAEAA 161

  Fly   161 QPRYNHD--VTSPY-----YINITH---RRHR----------------------PQPKFPEPT-- 191
            ...:|..  :|:.|     .|..|.   ||.|                      |..:.|:.|  
 Worm   162 SISFNRGNVLTNSYRCAKKKIRATFHAIRRSRSNSTATLQDVVLTSEGIRTVTTPSRRAPKATVY 226

  Fly   192 ---EVECADIPPLPDEESV-NLFALTEAHLTQLIQ-SQRQNQPEDPCQP-KRRTLIESWREKVER 250
               .:..:|:..:||...: |....|.....:..: :.|...||....| |:||.:...:    |
 Worm   227 AKRSMSVSDLLLIPDRRDIKNEDVKTRGSPVKKTRGTGRSRTPEAILNPRKQRTPVNHHK----R 287

  Fly   251 SRARQSLFHQYDEHVEAMVDDAISQEDFNYKEHLQKKLRDEDNSKNLTEDAPNSGRQVFEMLVEQ 315
            |:::::..        ..:....|...:|........||...::..|:.:.              
 Worm   288 SKSQETKL--------VAMPSPNSMAYYNTSRARNAGLRPAPSAPPLSPEP-------------- 330

  Fly   316 VSQAVVVEPEPEHSFFTAQGDEVDVAESSARQDEYFLQIKEAYVHTDDE------NGLVFYEARY 374
             :.|.|..|:...:..|::|.    ::|.|....||         |.||      |.:   |...
 Worm   331 -AIAAVKTPKTPTTPKTSKGR----SKSPANTTAYF---------TADESLELLGNNM---EKLN 378

  Fly   375 LQNRDRREPVEQTPKE-----------RKHDLESSVSTNYTLPLDYETDALRR--------ELTQ 420
            ::::..:....:||.:           .:.|.|:.|||..|:. |.|...:||        ||.:
 Worm   379 IESKSAKSSKLKTPSKPTTSSSTSFSSAEDDKEAEVSTPTTVD-DGEIRKIRRLREGELKSELKK 442

  Fly   421 LG-APVGPITKTTKRLYIKQLIKYKRNTEALLAAQKHAQDAQI---RYSVELHRTLRSPEDFARI 481
            .| :|.||:...|:|||.|:|:..:|.    :..:.::.||.:   |.|.:|...||        
 Worm   443 FGISPAGPLDARTRRLYEKKLLIERRK----ITNRGYSPDADVVSCRNSPQLELVLR-------- 495

  Fly   482 NDYLPHEATSAAHFAQCGVTKKNMREGHLKQSFIYMLIDPRI-SRNLPGESAFLEKFGVWQRFLD 545
            |.:||.:..|.|......|..:....|....:|.|:::|||| ..|:  |:..||      .|:.
 Worm   496 NGFLPADFASRARKCDENVRSEFSGNGFGYNAFCYLIMDPRILGSNV--ENLTLE------TFVR 552

  Fly   546 SIFYIGKGKCSRPYAHLYDAMRQHTRLHQKREKDKTNRERGGGFRTLQPDVFRSPPPGDGKMGSR 610
            ||||:|||..:||.||..||..:.   ..|.:|.||                           ..
 Worm   553 SIFYVGKGSKNRPLAHFIDARNER---RDKLDKLKT---------------------------CE 587

  Fly   611 KLERILDIWQHGSGVVCLHVFHNILPIDAYTREASIIDALGLNHLTNIKRGDYYGPAQSWTMKQK 675
            ||:.|.::|..|.|:....:.|.:...:|:.||||||:|:.|.:|.|.|.|:::|..:||....|
 Worm   588 KLKTIDELWTLGFGIPRHEISHGVSDEEAFVREASIIEAVKLKNLRNKKAGEFHGTTKSWDNITK 652

  Fly   676 KQLGIALLFKAMHIYLAEGESQLSPSDL 703
            .:.|..||.:|:.....||...::..:|
 Worm   653 SEYGTFLLDRALSTLKLEGIRLITEDNL 680

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8679NP_610099.1 ANK 15..133 CDD:238125 17/50 (34%)
ANK repeat 42..78 CDD:293786
Ank_5 67..121 CDD:290568 14/38 (37%)
ANK repeat 80..111 CDD:293786 10/28 (36%)
LEM 404..447 CDD:128813 18/51 (35%)
GIY-YIG_COG3680_Meta 513..657 CDD:198401 45/144 (31%)
lem-3NP_492539.2 Ank_4 31..84 CDD:290365 18/51 (35%)
ANK 32..122 CDD:238125 22/89 (25%)
ANK repeat 32..61 CDD:293786 10/28 (36%)
ANK repeat 63..94 CDD:293786 8/30 (27%)
Ank_4 66..112 CDD:290365 8/45 (18%)
ANK repeat 96..122 CDD:293786 2/25 (8%)
LEM 426..470 CDD:128813 15/47 (32%)
GIY-YIG_COG3680_Meta 527..634 CDD:198401 45/144 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 86 1.000 Domainoid score I5156
eggNOG 1 0.900 - - E33208_3CP12
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 138 1.000 Inparanoid score I3104
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D585791at33208
OrthoFinder 1 1.000 - - FOG0005201
OrthoInspector 1 1.000 - - otm14805
orthoMCL 1 0.900 - - OOG6_107773
Panther 1 1.100 - - LDO PTHR46427
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3306
SonicParanoid 1 1.000 - - X4821
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.900

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