DRSC/TRiP Functional Genomics Resources

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Protein Alignment clumsy and GLR3.4

DIOPT Version :9

Sequence 1:NP_001036373.1 Gene:clumsy / 35394 FlyBaseID:FBgn0026255 Length:1002 Species:Drosophila melanogaster
Sequence 2:NP_001030971.1 Gene:GLR3.4 / 839268 AraportID:AT1G05200 Length:959 Species:Arabidopsis thaliana


Alignment Length:995 Identity:200/995 - (20%)
Similarity:376/995 - (37%) Gaps:223/995 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 SQFMVGSIFTSDK---DESEIAFRTAVDRANILERNVELVPI-VVYANTDDS-FIMEKMVCNLIS 82
            |...||::||.|.   ..::.|.:.|:|..|..:..::.:.: :::.:::.| ||.......|:.
plant    59 SSVNVGALFTYDSFIGRAAKPAVKAAMDDVNADQSVLKGIKLNIIFQDSNCSGFIGTMGALQLME 123

  Fly    83 QGVIAIFGPSTGSSSDIIASICDTLDIPHIVYDWIPNESIPDREHSTMT----LNVHPDNLLLSQ 143
            ..|:|..||.:...:.:|:.:.:.|.:|.:.:      ...|...|::.    |....::.....
plant   124 NKVVAAIGPQSSGIAHMISYVANELHVPLLSF------GATDPTLSSLQFPYFLRTTQNDYFQMH 182

  Fly   144 GLAEIVQSFAWRSFTVVYETDK----ELQQLQDILQVGEPISNPTTVKQLGPGDDH---RPFLKE 201
            .:|:.:....||....::..|:    .:..|.|:|  .:..|..:....:.||.|.   |..|..
plant   183 AIADFLSYSGWRQVIAIFVDDECGRNGISVLGDVL--AKKRSRISYKAAITPGADSSSIRDLLVS 245

  Fly   202 IKLSTDNCLILHCAPDNLLKILQQANELKMLGE----YQSVFIPL-------LDTHSIDFGELSG 255
            :.|......::|..||:.|.:...|..|.|:..    ..:.::|.       :|:.::|.  |.|
plant   246 VNLMESRVFVVHVNPDSGLNVFSVAKSLGMMASGYVWIATDWLPTAMDSMEHVDSDTMDL--LQG 308

  Fly   256 VEANITTVRLMDPSDFHVKNVVHDWEEREKRE--GRYFKVDPN-RVKSQMILLNDAVWLFSKG-- 315
            |.|            |....:    |...||:  .|:..:.|| ...|..:...|:|||.::.  
plant   309 VVA------------FRHYTI----ESSVKRQFMARWKNLRPNDGFNSYAMYAYDSVWLVARALD 357

  Fly   316 --------------------------LTELGIFEELTAPDLECRRKKPWPFGKRIIEFIKARSEE 354
                                      |:.|.:|.|                |::.::.|...:..
plant   358 VFFRENNNITFSNDPNLHKTNGSTIQLSALSVFNE----------------GEKFMKIILGMNHT 406

  Fly   355 TSTGRIDFNENGQRSFFTLRFMELNSDGFLDLATWDPVNGLDVLNDDEESEKRVGQKLSN---KT 416
            ..||.|.|:.:..|.......:.|.......:..|...:||.|::.:....:......:|   |.
plant   407 GVTGPIQFDSDRNRVNPAYEVLNLEGTAPRTVGYWSNHSGLSVVHPETLYSRPPNTSTANQRLKG 471

  Fly   417 FIVSSRLGAPFLTLREPQEGEILTGNSR------------------------YEGYSIDLINEIA 457
            .|....       :.:|..|.:...|.:                        ..||.||:.....
plant   472 IIYPGE-------VTKPPRGWVFPNNGKPLRIGVPNRVSYTDYVSKDKNPPGVRGYCIDVFEAAI 529

  Fly   458 KMLNFKF--EFRMSPDGKYGALNKVTQTWDGIVRQLIDGNADLGICDLTMTSSRRQAVDFTPPFM 520
            ::|.:..  .:.:..|||.      ..::|.:|.:::..|.|:.:.|:|:.::|.:.||||.||:
plant   530 ELLPYPVPRTYILYGDGKR------NPSYDNLVNEVVADNFDVAVGDITIVTNRTRYVDFTQPFI 588

  Fly   521 TLGISIL--FSKPPTPPTDLFSFLSPFSLDVWIYMGSAYLFISLLLFALARMAPDDWENPHPCKE 583
            ..|:.::  ..:..:.|   :|||.||::::|...|..:||:..:::.|......::..|   ..
plant   589 ESGLVVVAPVKEAKSSP---WSFLKPFTIEMWAVTGGFFLFVGAMVWILEHRFNQEFRGP---PR 647

  Fly   584 PEEVENIWSIMNTTWLS-----IGSLMGQGCDILPKAASTRLVTGMWWFFALMMLNSYTANLAAF 643
            .:.:...|...:|.:.|     :.||             .|.|..:|.|..|::.:||||:|.:.
plant   648 RQLITIFWFSFSTMFFSHRENTVSSL-------------GRFVLIIWLFVVLIINSSYTASLTSI 699

  Fly   644 LTNSRQANSINSAEDLAAQSKIKYGAMAGGSTMGFFRDSNFSTYQKMWTAME-SASPS--VFTKT 705
            ||..:..:.|...:.|...:: ..|...|             |:.:.:...| :..||  |..|.
plant   700 LTIRQLTSRIEGIDSLVTSNE-PIGVQDG-------------TFARNYLINELNILPSRIVPLKD 750

  Fly   706 NDEGVERVQKGKN---LYAFLMESTTLEYNV-ERKCDLVQIGGWLDYKSYGIAMPFNSPYRKQIS 766
            .::.:..:|:|.|   :.|.:.|...:|..: ...|....:|.......:|.|...:||....:|
plant   751 EEQYLSALQRGPNAGGVAAIVDELPYIEVLLTNSNCKFRTVGQEFTRTGWGFAFQRDSPLAVDMS 815

  Fly   767 AAVLKLGELGQLAELKRKWWKEMHGGGNCEKSDEDGGDTPELGLENVGGVFLVLGLGLLSAMVLG 831
            .|:|:|.|.|:|.::.|||....|   .|.....:..|: :|.|::..|:||:.|:....|:   
plant   816 TAILQLSEEGELEKIHRKWLNYKH---ECSMQISNSEDS-QLSLKSFWGLFLICGITCFMAL--- 873

  Fly   832 CTEFLWNV--------KSVAIEEKI----------------SLKEAFKSEALFAARIWITTKPVH 872
             |.|.|.|        ...|.||:.                |.||..|......|.|....|  .
plant   874 -TVFFWRVFWQYQRLLPESADEERAGEVSEPSRSGRGSRAPSFKELIKVVDKREAEIKEILK--Q 935

  Fly   873 TSSESGSSNSSSSSSSRSKH 892
            .||:...|..|::.:|:|:|
plant   936 KSSKKLKSTQSAAGTSQSQH 955

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
clumsyNP_001036373.1 PBP1_iGluR_Kainate 26..396 CDD:107377 77/427 (18%)
ANF_receptor 39..379 CDD:279440 69/394 (18%)
PBP2_iGluR_Kainate 414..787 CDD:270432 89/415 (21%)
Lig_chan 548..812 CDD:278489 60/275 (22%)
GLR3.4NP_001030971.1 PBP1_GABAb_receptor_plant 62..450 CDD:380645 78/429 (18%)
Periplasmic_Binding_Protein_Type_2 <518..591 CDD:389745 21/78 (27%)
Lig_chan 615..869 CDD:365843 64/287 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1110.830

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