DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment clumsy and GLR5

DIOPT Version :9

Sequence 1:NP_001036373.1 Gene:clumsy / 35394 FlyBaseID:FBgn0026255 Length:1002 Species:Drosophila melanogaster
Sequence 2:NP_565744.1 Gene:GLR5 / 817801 AraportID:AT2G32400 Length:921 Species:Arabidopsis thaliana


Alignment Length:912 Identity:200/912 - (21%)
Similarity:361/912 - (39%) Gaps:185/912 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SLFLTHFLLIALPVLADIDRSQFM-VGSIFTSDKDESEIAFRTAVDRANILERNVELVPIVVYAN 66
            |:.:|..:::.|.|..|..|.|.: :|::|         ||.:.:.||    ..|.|...|...|
plant     8 SVAITALIVVILVVPMDCQRPQLVNIGAVF---------AFDSVIGRA----AKVALEAAVSDVN 59

  Fly    67 TDDSF--------IMEKMVCN----------LISQGVIAIFGPSTGSSSDIIASICDTLDIPHIV 113
            .|.||        :||...||          |:.:.|:|:.||.:.|.:..|:.|...|..|.:.
plant    60 NDKSFLKETELRLLMEDSACNVFRGSFGAFELLEKEVVAMIGPISSSVAHTISDIAKGLHFPLVS 124

  Fly   114 YDWIPNESIPDREHSTMT----LNVHPDNLLLSQGLAEIVQSFAWRSFTVVYETDK--------- 165
            :      :..|...|.:.    |...|::......|.:::..:.|:....||..|:         
plant   125 F------AATDPTLSALQFPFFLRTTPNDAHQMSALVDLINFYGWKEVISVYSDDELGRNGVSAL 183

  Fly   166 --ELQQLQDILQVGEPISNPTTVKQLGPGDDHRPFLKEIKLSTDNCLILHCAPDNLLKILQQANE 228
              ||.:.:..:....|:|..:..|.|...      |.:.|.......|||..||.||:|...|.:
plant   184 DDELYKKRSRISYKVPLSVHSDEKFLTNA------LNKSKSIGPRVYILHFGPDPLLRIFDIAQK 242

  Fly   229 LKMLGEYQSVFIP------LLDTHSIDFGELSGVEANITTVRLMDPSDFHVKNVVHDWEEREKRE 287
            |:|: .::.|::.      .||:.| |.|.|..:| .:..:|...|....:::..|         
plant   243 LQMM-THEYVWLATDWLSVTLDSLS-DKGTLKRLE-GVVGLRQHIPESVKMEHFTH--------- 295

  Fly   288 GRYFKVDPNR-VKSQMILLNDAVWLFSKGLTEL---GI------FEEL---TAPDLECRRKKPWP 339
                |:..|| :.:..:...|.||:.:.|:.||   ||      .|:|   ....|...:.|.:.
plant   296 ----KLQSNRSMNAYALHAYDTVWMIAHGIEELLNEGINITFSYSEKLLHARGTKLHLEKIKFFN 356

  Fly   340 FGKRIIEFIKARSEETSTGRIDFNENGQRSFFTLRFMELNSDGFLDLATWDPVNGLDVLNDDEES 404
            .|:.::|.:...:.....|::.|.............:.:|......:..|....|..|:    ..
plant   357 SGELLLEKLLKVNFTGIAGQVQFGSGRNVIGCDYEIINVNKTDVHTVGFWSKNGGFSVV----AP 417

  Fly   405 EKRVGQKLSNKTFIVSSRLGAPFLTL----REPQEGEILTGNS---------------------- 443
            :.|..||  ..:|:...:||.  :|.    ||...|.::..::                      
plant   418 KTRHSQK--KTSFVSDEKLGD--ITWPGGGREKPRGWVIADSADPLKIVVPRRVSFVEFVTEEKN 478

  Fly   444 ---RYEGYSIDLINEIAKMLNFKFEFRMSPDGKYGALNKVTQTWDGIVRQLIDGNADLGICDLTM 505
               |.:|:.||:..|..|.:.:...:...|.|.    ...:..::.:::.:.||..|..:.|:.:
plant   479 SSHRIQGFCIDVFIEALKFVPYSVPYIFEPFGN----GHSSPNYNHLIQMVTDGVYDAAVGDIAI 539

  Fly   506 TSSRRQAVDFTPPFMTLGISILFSKPPTPPTDLFSFLSPFSLDVWIYMGSAYLFISLLLFALARM 570
            ..||.:.|||:.|:.:.|:.::.  |.......:.||.||:..:|..:..::|.|:::::.|...
plant   540 VPSRSKLVDFSQPYASTGLVVVI--PANDDNATWIFLRPFTSRLWCVVLVSFLVIAVVIWILEHR 602

  Fly   571 APDDWENPHPCKEPEEVENIWSIMNTTWL-SIGSLMGQGC-DILPKAASTRLVTGMWWFFALMML 633
            ..:|:..| |.::          ::|..| |..:|..:.. |.:...|  |||..:|.|..:::.
plant   603 INEDFRGP-PRRQ----------LSTMLLFSFSTLFKRNQEDTISNLA--RLVMIVWLFLLMVLT 654

  Fly   634 NSYTANLAAFLTNSRQANSINSAEDLAAQSKIKYGAMAGGSTMGFFRDSNFSTYQKMWTAMESAS 698
            .||||||.:.||..:..::|...:.|.| |::..|..||..|:      .:.|| .:..|.....
plant   655 ASYTANLTSILTVQQLPSAITGIDSLRA-SEVPIGYQAGTFTL------EYLTY-SLGMARSRLV 711

  Fly   699 PSVFTK----------TNDEGVER-VQKGKNLYAFLMESTTLEYNVERKCDLVQIGGWLDYKSYG 752
            |...|:          ||..||.. |.:...:..||.|.|..:.          :|....::.:|
plant   712 PLDSTEEYEKALKLGPTNWGGVAAIVDELPYIELFLAERTGFKI----------VGEPFMHRGWG 766

  Fly   753 IAMPFNSPYRKQISAAVLKLGELGQLAELKRKWWKEMHGGGNCEKSDEDGGDTPELGLENVGGVF 817
            .|...:||....:|.|:|||.|..:|.|:::||..:.    ||........:..:|.|::..|::
plant   767 FAFKRDSPLAIDMSTAILKLSETRKLQEIRKKWLCKT----NCAGKSNWNPEPNQLHLKSFKGLY 827

  Fly   818 LV 819
            ||
plant   828 LV 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
clumsyNP_001036373.1 PBP1_iGluR_Kainate 26..396 CDD:107377 88/422 (21%)
ANF_receptor 39..379 CDD:279440 83/391 (21%)
PBP2_iGluR_Kainate 414..787 CDD:270432 94/414 (23%)
Lig_chan 548..812 CDD:278489 67/276 (24%)
GLR5NP_565744.1 PBP1_GABAb_receptor 32..416 CDD:107361 89/428 (21%)
ANF_receptor 46..396 CDD:279440 80/381 (21%)
GluR_Plant 458..800 CDD:270404 86/378 (23%)
Lig_chan 581..832 CDD:278489 70/284 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.830

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