DRSC/TRiP Functional Genomics Resources

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Protein Alignment clumsy and grik5l

DIOPT Version :10

Sequence 1:NP_001036373.1 Gene:clumsy / 35394 FlyBaseID:FBgn0026255 Length:1002 Species:Drosophila melanogaster
Sequence 2:NP_001072565.1 Gene:grik5l / 780020 XenbaseID:XB-GENE-5860197 Length:479 Species:Xenopus tropicalis


Alignment Length:491 Identity:156/491 - (31%)
Similarity:261/491 - (53%) Gaps:42/491 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   398 LNDDEESEKRVGQKLSNKTFIVSSRLGAPFLTLREPQEGEILTGNSRYEGYSIDLINEIAKMLNF 462
            ::.::|..||  |.|.:.|  |::.:..||....|          |..||:.|||::|:|:.|.|
 Frog    28 IHKEKERSKR--QALKHLT--VTTIMEQPFSMKTE----------SGMEGFCIDLLSELAQSLGF 78

  Fly   463 KFEFRMSPDGKYGALNKVTQTWDGIVRQLIDGNADLGICDLTMTSSRRQAVDFTPPFMTLGISIL 527
            .:..:...||:|||.:: ...|:|:|.:::...|||.:..||:|.:|.:.:.||.|||..|||||
 Frog    79 NYTIKEVKDGRYGAKDQ-DGNWNGMVGEVLRKEADLAVAPLTITGARERELAFTKPFMQTGISIL 142

  Fly   528 FSKPPTPPTD-LFSFLSPFSLDVWIYMGSAYLFISLLLFALARMAPDDWENPHPCKEPEEVENIW 591
            ..|....... ||.||:|||.:.||.:..||:..||.||.:.|::|.:|      .|....:|.:
 Frog   143 LRKDDVSENSYLFGFLTPFSKETWIGILVAYVVTSLCLFLVGRLSPCEW------TELSTEQNNF 201

  Fly   592 SIMNTTWLSIGSLMGQGCDILPKAASTRLVTGMWWFFALMMLNSYTANLAAFL-TNSRQANSINS 655
            :.:|:.|..:|:...||.:..||:.|.|::..:||.|:::::.:|.|:.|||| ::|.|..:|.:
 Frog   202 NFLNSLWFGVGAFTLQGAEPHPKSVSARIIAVIWWIFSIVLVAAYIASFAAFLNSDSMQTTNIQT 266

  Fly   656 AEDLAAQSKIKYGAMAGGSTMGFFRDSNFSTYQKMWTAMESASPSVFTKTNDEGVERVQKGKNLY 720
            .|||..|..:::|.:...||..||::|...||:.::..|:.....:..|:..|||.||::..  |
 Frog   267 FEDLVNQRTLEFGTINSSSTFQFFKNSKNPTYRMIYEYMDKRKDELLVKSFAEGVRRVKESN--Y 329

  Fly   721 AFLMESTTLEYNVERKCDLVQIGGWLDYKSYGIAMPFNSPYRKQISAAVLKLGELGQLAELKRKW 785
            |||.||...:..|.:.||||:....:..:.||||...:||..|.:|.|:|:..|.|.:..|::||
 Frog   330 AFLGESVMQDIMVAKHCDLVRAPQIIAGRGYGIAASLDSPLIKPLSVAILEQTESGNIEYLRKKW 394

  Fly   786 WKEMHGGGNCEKSDEDGGDTPELGLENVGGVFLVLGLGLLSAMVLGCTEFLWNVKSVAIEEKISL 850
            |     ...|......|.:..:  ...:||:||:||:||...::....|.:...::.|.::|.|.
 Frog   395 W-----DNTCNMKRSAGWNPVQ--PHTLGGIFLILGIGLALGVIAALVELVLKARNNADQQKKSC 452

  Fly   851 KEAFKSEALFAARIWITTKPVHTSSES-GSSNSSSS 885
            ..||..|         ..:.:.|:.|: |:|:|:.|
 Frog   453 CSAFSEE---------MGERLGTNKENQGASDSAKS 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
clumsyNP_001036373.1 PBP1_iGluR_Kainate 27..397 CDD:380605
PBP2_iGluR_Kainate 414..787 CDD:270432 127/374 (34%)
grik5lNP_001072565.1 PBP2_iGluR_non_NMDA_like 41..396 CDD:270403 128/380 (34%)
Blue background indicates that the domain is not in the aligned region.

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