DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment clumsy and grin3a

DIOPT Version :9

Sequence 1:NP_001036373.1 Gene:clumsy / 35394 FlyBaseID:FBgn0026255 Length:1002 Species:Drosophila melanogaster
Sequence 2:XP_009303361.1 Gene:grin3a / 564832 ZFINID:ZDB-GENE-130530-780 Length:1111 Species:Danio rerio


Alignment Length:1069 Identity:229/1069 - (21%)
Similarity:390/1069 - (36%) Gaps:271/1069 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 DIDRSQFMVGS-IFTSDKDESEIAFRT--AVDRANILERN----VELVPIVVYANTDD------- 69
            |.||..:.... ||.||.:|.....||  :|:..|...::    .::.|.||:...|.       
Zfish    75 DADREMWEEWDVIFQSDHEEDWRGIRTKSSVNNLNKASKSKTVLKQVAPDVVFLPRDSVLLASES 139

  Fly    70 --------------------------------------------SFIMEKMVCN-LISQGVIAIF 89
                                                        ||:  :.||: :|.|||.||.
Zfish   140 LNRVAGLLPYNLTLEIVMAVEAGLGELPAFSFSSSSTPACADPVSFL--QSVCHTVIVQGVSAII 202

  Fly    90 G-PSTGSSSDIIASICDTLDIPHIVYDWIPNESIPDREHSTMTLNV--------HPD----NLLL 141
            . |........:..|..||.||.|        |:...|....|.|:        :|.    ||:.
Zfish   203 SFPQNRDELVKLEFIASTLQIPVI--------SVVQSEFQRQTQNLLHFQMAMQNPQTSQANLIF 259

  Fly   142 SQGLAEIVQSFAWRSFTVVYETDKELQQLQDILQVGEPISNPTTVK----QLGPGDDH---RPFL 199
            |     ::....|...::|......:.....:|.........|.:|    .....|.|   :..|
Zfish   260 S-----LLSMNNWFDVSLVMCQQMNISDFVFLLHNNSKFHLGTVLKISTNSSSKNDFHIFLQAQL 319

  Fly   200 KEIKLSTDNCLILHCAPDNLLKILQQANELKM--------LGEYQSVFIPLLDTHSIDFGELS-G 255
            :.||.||...:...|...::.:|.....:..:        :|:.|:|  ..|.|..:..|.|: |
Zfish   320 ESIKDSTSTLVTFGCDIRDIRRIFTTIAKFGLILPDYHWIIGDSQNV--EELRTEGLPMGLLAHG 382

  Fly   256 VEANITTVRLMDPS-DFHVKNVVHDWEEREKREGRYFKVDPNRVKSQMILL----NDAVWLFSKG 315
                    |:.:|| |.:|::.:   |...:..|....|.|     |:.|:    |....|.:|.
Zfish   383 --------RMGEPSLDHYVQDAL---ELVARAVGSAATVSP-----QLALIPGTTNCLARLEAKN 431

  Fly   316 LTE-------------------LGIFEELTAP--------DLE--------CRRKKPWPFGKRII 345
            ||.                   :.:.||.|..        :|:        ..|...|..||.::
Zfish   432 LTSGTFLSRYMASTSFDGLSGCISVQEESTIISESHHFIWNLQHDPIGKPMWTRLGSWKHGKVVM 496

  Fly   346 EF----IKARSEETSTGRIDFNENGQRSFFTLRFMELNSDGFLDLATWDPVNGLDVLNDDEESEK 406
            ::    .|.||:..:..|       ..|...||.:.|....|        |...||   |:|...
Zfish   497 DYGVWPNKRRSQPGADWR-------HSSRLHLRVVTLVEHPF--------VFTRDV---DDEGLC 543

  Fly   407 RVGQ----KLSNKTFIVSSRLGAPFLTLREPQEGEILTGNSRYEGYSIDLINEIAKMLNFKFEFR 467
            ..||    .|:|.|.::.|.    |..|:...:...|.......||.|||:.::|:.:.|.|:..
Zfish   544 PAGQLCLDPLTNDTALLESL----FQGLQGANDTVPLEFKKCCYGYCIDLLEKLAEDMGFDFDLY 604

  Fly   468 MSPDGKYGALNKVTQTWDGIVRQLIDGNADLGICDLTMTSSRRQAVDFTPPFMTLGISILFSKPP 532
            :..||||||..  ...|.|:|..|:.|.|.|.:...::.|:|.|.:|||.||.:..:.||.....
Zfish   605 IVGDGKYGAYK--NGRWTGLVGDLMSGAAHLAVTSFSINSARSQVIDFTSPFFSTSLGILVRTRD 667

  Fly   533 TPPTDLFSFLSPFSLDVWIYMGSAYLFISLLLFALARMAPDDWENPHPC----KEPEEVENIWSI 593
            | ...:.:|:.|....:|:     .:|:||.:.|:. :...:|::|...    :..:.|.:..|.
Zfish   668 T-AAPIGAFMWPLHWSMWL-----GIFVSLHVTAVF-LTLYEWKSPFGMTPRGRNRDRVFSFSSA 725

  Fly   594 MNTTWLSIGSLMGQGCDIL-PKAASTRLVTGMWWFFALMMLNSYTANLAAFLTNSRQANSINSAE 657
            :|..:   ..|.|:...|. ||..:.|.:..:|..|.|..|::|||||||.:...:....::...
Zfish   726 LNVCY---AILFGRTAAIKPPKCWTGRFLMNLWAIFCLFCLSTYTANLAAVMVGEKTYEQLSGIH 787

  Fly   658 DLAAQSKIKYGAMAGGSTMGFFRDSNFSTY-QKMWTAMESASPSVFTKTNDEGVERVQKG-KNLY 720
            |    .|:.:.:.  |...|..|:|:...| :|.:..|..........|..:|::.::.. :.|.
Zfish   788 D----PKLHHPSQ--GFRFGTVRESSAEDYVKKSFPEMHEYMRRYNAPTTPDGIDHLKDDPQKLD 846

  Fly   721 AFLMESTTLEYNVERKCDLVQIGGW---------LDYKSYGIAMPFNSPYRKQISAAVLKLGELG 776
            ||:|:...|:|             |         |....|||.:..|||....||..|.:....|
Zfish   847 AFIMDKALLDY-------------WAHADKXYISLLLTGYGIGLKQNSPLTSNISELVSQYKSDG 898

  Fly   777 QLAELKRKWWKEMHGGGNCEKSDEDGGDTPELGLENVGGVFLVLGLGLLSAMVLGCTEFL---WN 838
            .:..|..||:|.:    .|.|......:|.::|:::..|:|::|.:|:..:::....|.:   |.
Zfish   899 FMDMLHDKWYKVV----PCGKRSFAVTETLQMGIKHFSGLFVMLCVGVALSLLTTLGEHIVHRWV 959

  Fly   839 VKSV--AIEEKI----------SLKEAFKSEALFAARIWITTKPVHTSSESGSSNSSSSSSSRSK 891
            :..:  :.|.|.          :|...||.:.|            .|.::...|.:..::.....
Zfish   960 IPRMQESTEHKYWLHTSQRLHRALNPTFKEDKL------------QTVAKPEKSCNVGNNQQMPW 1012

  Fly   892 HSFKSQGLSMKSLKS-SGYQDVEASVHSK 919
            :|..:...:.:.|.: .|..|:|. .|.|
Zfish  1013 NSLGTPNCNRRKLSNQEGQNDLEC-CHCK 1040

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
clumsyNP_001036373.1 PBP1_iGluR_Kainate 26..396 CDD:107377 94/501 (19%)
ANF_receptor 39..379 CDD:279440 86/470 (18%)
PBP2_iGluR_Kainate 414..787 CDD:270432 99/388 (26%)
Lig_chan 548..812 CDD:278489 64/279 (23%)
grin3aXP_009303361.1 Periplasmic_Binding_Protein_Type_1 36..502 CDD:299141 87/459 (19%)
ANF_receptor 132..452 CDD:279440 63/352 (18%)
PBP2_iGluR_NMDA_Nr3 518..908 CDD:270438 110/435 (25%)
Lig_chan 682..941 CDD:278489 67/290 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591057
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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