DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment clumsy and grid1b

DIOPT Version :9

Sequence 1:NP_001036373.1 Gene:clumsy / 35394 FlyBaseID:FBgn0026255 Length:1002 Species:Drosophila melanogaster
Sequence 2:XP_009304811.1 Gene:grid1b / 557511 ZFINID:ZDB-GENE-121214-84 Length:1048 Species:Danio rerio


Alignment Length:1073 Identity:276/1073 - (25%)
Similarity:442/1073 - (41%) Gaps:169/1073 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 VGSIFTSDKDESEIAFRTAVDRANI---LERNVELVPIVVYANTDDSFIMEKMVCNLISQGVIAI 88
            :|:||..:....:..|:.|:...::   :.::.::...:.|...::.|...:..|.|::||::|:
Zfish    26 IGAIFEENAARDDEVFQLAISDLSLNDDILQSEKITHSIKYIEPNNPFQAVQEACELMTQGILAL 90

  Fly    89 FGPSTG-SSSDIIASICDTLDIPHIVYDWIPNESIPDREHSTMTLNVHPDN----------LLLS 142
            . .||| :|:..:.|:.|.:.|||: |.....|..|   .:...||..||.          :.|.
Zfish    91 V-TSTGCASASALQSLTDAMHIPHL-YVQRNAEGSP---RTACQLNPSPDGERYTLAARPPVRLG 150

  Fly   143 QGLAEIVQSFAWRSFTVVYETDKELQQLQDIL-----------------QVGEPISNPTTVKQLG 190
            ..:..:|....|:.|.|.|::|.:::.||..|                 .:....|:..|..:..
Zfish   151 DVMLTLVGELRWQKFIVFYDSDYDIRGLQVFLDQTSRQGLDVSLQRVDRNISGVFSSLFTSMRTE 215

  Fly   191 PGDDHRPFLKEIKLSTDNCLILHCAPDNLLKILQQANELKMLG-EYQSVFI--PLLDTHSIDFGE 252
            ..:.:|..|:.        .||..:|......:.||.|..:.. :...||:  .:.||..::...
Zfish   216 ELNRYRDTLRR--------AILLLSPRGAQVFIHQAVETNLASKDSHWVFVNEEISDTEILELAH 272

  Fly   253 LSGVEANITTVRLMDPSDFHVKNVVHDWEE------REKREGRYFKVDPNR-----VKSQMILLN 306
            .|  ...:|.||.:.|.          |.:      |..........||..     ::...:.|.
Zfish   273 SS--LGRMTVVRQIFPL----------WRDSSVSCMRNSHRISSLLCDPQEGYLQSLEVSNLYLY 325

  Fly   307 DAVWLFSKGLTELGIFEEL------TAPDLECRRK--KPWPFGKRIIEFIKARSEETSTGRIDFN 363
            |:|.:.:.     ..:.:|      :...|.|.||  |||..|..::|.|:.......||.:||.
Zfish   326 DSVLMLAN-----AFYRKLEDRKWHSMASLNCIRKSTKPWNGGWSMLETIQKGRITGLTGIMDFM 385

  Fly   364 ENGQRSFFTLR-----FMELNSDGFLDLATWDPVNGLDVLNDDEESEKRVGQKLSNKTFIVSSRL 423
            |||..|.....     |.|........|||||.|:||    :....|.|:...:...|..|.:.|
Zfish   386 ENGSNSHVQFEILGTSFSETFGKDIKRLATWDSVHGL----NG
SLKESRIENGMQGVTVKVVTLL 446

  Fly   424 GAPFLTLREPQEGEILTGNSRYEGYSIDLINEIAKMLNFKFEFRMSPDGKYGALNKVTQTWDGIV 488
            ..||:.:.|    .||....||:|:|||::..:||:|.||::.....|.|||: .....:|:|::
Zfish   447 EDPFVMVAE----NILGQPKRYKGFSIDVLEALAKILGFKYDIYQVADSKYGS-QLSNGSWNGMI 506

  Fly   489 RQLIDGNADLGICDLTMTSSRRQAVDFTPPFMTLGISILFSKPPTPPTDLFSFLSPFSLDVWIYM 553
            .:||:..|||.:..:|:|..|...|||:..:|...:.||..| |....::||..:||.|.||..:
Zfish   507 GELINKRADLAVSAITITPERENVVDFSKRYMDYSVGILHRK-PEEKINIFSLFAPFDLAVWACI 570

  Fly   554 GSAYLFISLLLFALARMAPDDWENPHPCKEPEEVENIWSIMNTTWLSIGSLMGQGCDILPKAAST 618
            .:|...:.:|:|.|.||.....:||........:.|  |:.:..|:..|:.:.||.|.:..:.:.
Zfish   571 AAAIPVVGVLIFLLTRMQMLRSQNPPGAHHASSMSN--SLHSAIWIVYGAFVQQGGDSVVGSVAL 633

  Fly   619 RLVTGMWWFFALMMLNSYTANLAAFLTNSRQANSINSAEDLAAQSKIKYGAMAGGSTMGFFRDSN 683
            |:|.|.||.|.|::.:|||||||||||.||..|:|.:.:|||.|....||.:...:...:|:...
Zfish   634 RIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNTIRTFQDLARQMDFAYGTVRDSAVYDYFKAKG 698

  Fly   684 F------STYQKMWTAMESASPSVFTKTN-DEGVERVQKGKNLYAFLMESTTLEYN--VERKCDL 739
            .      |||.::|..:...:...|:.:: .||:.:.:||.  ||||.:...:||.  .:..|.:
Zfish   699 TNPLEQDSTYAELWRTISKNNGQDFSVSSPSEGIRKAKKGP--YAFLWDMAVVEYAALTDDDCTI 761

  Fly   740 VQIGGWLDYKSYGIAMPFNSPYRKQISAAVLKLGELGQLAELKRKWWKEMHGGGNCEKSDEDGG- 803
            ...|..:..|.|||||...||||..||..:|:|.|.|.|..||:|||...   |.|:.:..... 
Zfish   762 TVSGNSMSSKGYGIAMQHGSPYRDLISQKILELQEKGDLDVLKQKWWPRT---GRCDLNSHSNAQ 823

  Fly   804 -DTPELGLENVGGVFLVLGLGLLSAMVLGCTEFLWNVKSVAIEEKISLKEAFKSEALFAARIWIT 867
             |...|.|.:..|||.:|..|||.|.::...|..||......|:.   ||..|...|......:|
Zfish   824 PDGRSLKLHSFAGVFCILAAGLLLACLVAALEMWWNSNRCRQEQP---KEVTKDYRLARVSGPLT 885

  Fly   868 TKPVHTSSESGSSN-----------------SSSSSSSRSKHSFK---SQGLSMKSLKSSGYQDV 912
            ...:.|:|..||.:                 ...........:|:   .:|...::...:.|:|:
Zfish   886 YNDIATASSEGSKDIWTDRERDWDEAEAIDTGQGGEPGTGASAFEQPYGRGHGTQADPRTIYRDL 950

  Fly   913 --EASVHSKLKKIGSMFSLKSQKTV---TPPPEIGW---KLDKSTQIDVVPTSDVDQELIPEVEP 969
              ....|:.....|....|.....|   .||....|   ..|..:.....|:|   |:|      
Zfish   951 CPGHRQHAAQPAAGGCARLPGHGPVCEHLPPGASSWGGSDTDPGSWQHPAPSS---QQL------ 1006

  Fly   970 HLPHRHHHHHHHRHHHHHHQPDQEHDRNPSPPE 1002
                         ||..|....|...|.|.|.|
Zfish  1007 -------------HHPLHPMQTQGSQRGPVPTE 1026

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
clumsyNP_001036373.1 PBP1_iGluR_Kainate 26..396 CDD:107377 92/426 (22%)
ANF_receptor 39..379 CDD:279440 82/397 (21%)
PBP2_iGluR_Kainate 414..787 CDD:270432 130/381 (34%)
Lig_chan 548..812 CDD:278489 90/274 (33%)
grid1bXP_009304811.1 PBP1_iGluR_delta_1 25..424 CDD:107387 93/431 (22%)
ANF_receptor 36..400 CDD:279440 80/393 (20%)
Periplasmic_Binding_Protein_Type_2 437..809 CDD:304360 130/381 (34%)
Lig_chan 565..840 CDD:278489 93/281 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590990
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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