DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment clumsy and GluRIB

DIOPT Version :9

Sequence 1:NP_001036373.1 Gene:clumsy / 35394 FlyBaseID:FBgn0026255 Length:1002 Species:Drosophila melanogaster
Sequence 2:NP_001261621.2 Gene:GluRIB / 44484 FlyBaseID:FBgn0264000 Length:1182 Species:Drosophila melanogaster


Alignment Length:1200 Identity:320/1200 - (26%)
Similarity:506/1200 - (42%) Gaps:332/1200 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 ALPVLADIDRSQFMVGSIFTSDKDESEIAFRTAV--DRANILERNVELVPIVVYANTDDSFIMEK 75
            |.|.|.:    :..:|:||....||.:.||:.|:  ...|:..|..||...|...||.|:|.:.:
  Fly    34 AQPSLTE----KIPLGAIFEQGTDEVQSAFKYAMLNHNLNVSSRRFELQAYVDVINTADAFKLSR 94

  Fly    76 MVCNLISQGVIAIFGPSTGSSSDIIASICDTLDIPHIVYDWIPNESI-PDREHSTMTLNVHPDNL 139
            ::||..|:||.::.|..:..|.|.:.|..:|..:| .|..|.|.:.: |........|::.||  
  Fly    95 LICNQFSRGVYSMLGAVSPDSFDTLHSYSNTFQMP-FVTPWFPEKVLTPSSGFLDFALSMRPD-- 156

  Fly   140 LLSQGLAEIVQSFAWRSFTVVYETDKELQQLQDILQVGEP------------ISNPT-------T 185
             ..|.:.:.:|.:.||....:|::...|.:||.|.|...|            |||.:       |
  Fly   157 -YHQAIIDTIQFYGWRKIIYLYDSHDGLLRLQQIYQGLRPGNESFQVELVKRISNVSMAIEFLHT 220

  Fly   186 VKQLGPGDDHRPFLKEIKLSTDNCLILHCAPDNLLK--ILQQANELKMLGE--YQSVFIPLL--- 243
            ::|:|..::..             ::|.| |..:.|  ::|...:|: ||.  |..:...|:   
  Fly   221 LEQIGRFENKH-------------IVLDC-PTEMAKQILIQHVRDLR-LGRRTYHYLLSGLVMDD 270

  Fly   244 --DTHSIDFGELSGVEANITTVRLMDPSDFHVKNVVHDWEEREKREGRYFKVDP--------NRV 298
              ::..|:||.:     |||..|::|.:...|:.....|:          ::||        ..:
  Fly   271 RWESEIIEFGAI-----NITGFRIVDTNRRLVREFYDSWK----------RLDPQMSVGAGRESI 320

  Fly   299 KSQMILLNDAVWL----FSKGL------------------------------------------- 316
            .:|..|:.|||::    |:|.|                                           
  Fly   321 SAQAALMYDAVFVLVEAFNKILRKKPDQFRNNVQRRSQTLMVAQAAASTSSDGYNYSASGGGGGN 385

  Fly   317 ---------TELGIFEELTAPDLECRRKK----PWPFGKRIIEFIKARSEETSTGRIDFNENGQR 368
                     ::.|....:.:..|:|...|    .|..|.:|..:::....|..||.|.||::|:|
  Fly   386 GGAGGGFAGSDSGGSGGMASRALDCNTAKGWVNAWEHGDKISRYLRKVEIEGLTGDIKFNDDGRR 450

  Fly   369 SFFTLRFMELN-SDGFLDLATWDPVNGLDVLN-------DDEESEKRVGQKLSNKTFIVSSRLGA 425
            ..:||..:|:. :...:.:|.|:...||..||       ...|.||       |:|:||::.|..
  Fly   451 VNYTLHVVEMTVNSAMVKVAEWNDDAGLQPLNAKYVRLRPHVEFEK-------NRTYIVTTVLEE 508

  Fly   426 PFLTLREPQEGEILTGNSRYEGYSIDLINEIAKMLNFKFEFRMSPDGKYGA-LNKVTQTWDGIVR 489
            |::.|::...||.|.||:|:|||..||.:.:||.|...:|.|:..||.||: .:.....|||:|.
  Fly   509 PYIMLKQVAFGEKLHGNNRFEGYCKDLADLLAKELGINYELRLVKDGNYGSEKSSAHGGWDGMVG 573

  Fly   490 QLIDGNADLGICDLTMTSSRRQAVDFTPPFMTLGISILFSKPPTPPTDLFSFLSPFSLDVWIYMG 554
            :|:...||:.|..:|:|:.|.:.:||:.|||:|||||:..||......:|||::|.|.::|:.:.
  Fly   574 ELVRKEADIAIAAMTITAERERVIDFSKPFMSLGISIMIKKPVKQTPGVFSFMNPLSQEIWVSVI 638

  Fly   555 SAYLFISLLLFALARMAPDDW----------ENPHPCKEPEE----------------------- 586
            .:|:.:|::||.::|.:|.:|          ::|.|....|:                       
  Fly   639 FSYIGVSIVLFFVSRFSPHEWRLVQQQPQQSQSPDPHAHHEQLANQQPPGIIGGAPLPAPPGPPT 703

  Fly   587 -----------------------------VENIWSIMNTTWLSIGSLMGQGCDILPKAASTRLVT 622
                                         |.|.:|:.|:.|.|:.:.|.||||:.|::.|.|:..
  Fly   704 PGAQTAAGAAALQAALSAGSPGSGGSSSAVVNEFSVWNSFWFSLAAFMQQGCDLSPRSVSGRIAA 768

  Fly   623 GMWWFFALMMLNSYTANLAAFLTNSRQANSINSAEDLAAQSKIKYGAMAGGSTMGFFRDSNFSTY 687
            ..|:||.|::::|||||||||||..|....|||.||||.|::::||.:..|||..|||.|....:
  Fly   769 ASWFFFTLILISSYTANLAAFLTVERMVTPINSPEDLAMQTEVQYGTLLHGSTWDFFRRSQIGLH 833

  Fly   688 QKMWTAMESASPSVFTKTNDEGVERVQKGKNLYAFLMESTTLEY-NVERKCDLVQIGGWLDYKSY 751
            .|||..|.|.. .||..|.|||::||:..|..||.|:||...|| |....||.:::|..||.|.:
  Fly   834 NKMWEYMNSRK-HVFVPTYDEGIKRVRNSKGKYALLVESPKNEYVNAREPCDTMKVGRNLDTKGF 897

  Fly   752 GIAMPFNSPYRKQISAAVLKLGELGQLAELKRKWWKEMHGGGNCEKSDEDGGDT--PELGLENVG 814
            |||.|..|..:..|:.|||.|.|.|:|.:|:.|||.|     ..|.|....|:|  .||.|.||.
  Fly   898 GIATPLGSALKDPINLAVLTLKENGELIKLRNKWWYE-----KAECSTHKDGETSHSELSLSNVA 957

  Fly   815 GVFLVLGLGLLSAMVLGCTEFLWNVKSVAIEEKISLKEAFKSEALFAARIWITTKPVHTSSESGS 879
            |:|.:|..|||.::.:...|:                 .|:|.                     .
  Fly   958 GIFYILIGGLLVSVFVAILEY-----------------CFRSR---------------------D 984

  Fly   880 SNSSSSSSSRSKHSFKSQGLSMKSL-KSSGYQDVEAS-------------------VHSKLK--- 921
            |.|:||.|..........|:|..|| |::|...:..|                   :|:|.|   
  Fly   985 SRSASSGSGMGLGMGLGGGMSGGSLGKANGSMMLGPSSAVPGGMPSSHQRSTLTDTMHAKAKLTI 1049

  Fly   922 ---------KIG--SMFSLK----SQKTVTPPPEIGWKLDKSTQIDVVPTSDVDQELIPEVEPHL 971
                     ::|  :..||:    :|.:.|||                   |....|        
  Fly  1050 QASRDYDNGRVGYLNCASLQYYPPAQLSATPP-------------------DAGDSL-------- 1087

  Fly   972 PHRHHHHHHHRHHHHHHQPDQEHDRNPSPP 1001
                 |.:.|....|.|..:....|.|..|
  Fly  1088 -----HMNAHGQVXHEHAQESRLXRTPCAP 1112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
clumsyNP_001036373.1 PBP1_iGluR_Kainate 26..396 CDD:107377 103/469 (22%)
ANF_receptor 39..379 CDD:279440 95/438 (22%)
PBP2_iGluR_Kainate 414..787 CDD:270432 157/436 (36%)
Lig_chan 548..812 CDD:278489 111/328 (34%)
GluRIBNP_001261621.2 PBP1_iGluR_AMPA 43..478 CDD:107375 102/468 (22%)
ANF_receptor 55..461 CDD:279440 95/439 (22%)
PBP2_iGluR_AMPA 497..938 CDD:270433 159/446 (36%)
Lig_chan 632..967 CDD:278489 116/340 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462510
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
87.790

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