DRSC/TRiP Functional Genomics Resources

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Protein Alignment clumsy and KaiR1D

DIOPT Version :9

Sequence 1:NP_001036373.1 Gene:clumsy / 35394 FlyBaseID:FBgn0026255 Length:1002 Species:Drosophila melanogaster
Sequence 2:NP_650925.1 Gene:KaiR1D / 42473 FlyBaseID:FBgn0038837 Length:853 Species:Drosophila melanogaster


Alignment Length:858 Identity:374/858 - (43%)
Similarity:536/858 - (62%) Gaps:39/858 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LIALPVLADIDRSQFM-----VGSIFTSDKDESEIAFRTAVDRAN----ILERNVELVPIVVYAN 66
            |:.|.::.:..::|.:     :|.:|....|..|:|||.||||.|    ||.|: :||..:...:
  Fly    11 LLLLQLILNCRKAQSLPDIIKIGGLFHPADDHQELAFRQAVDRINADRSILPRS-KLVAQIERIS 74

  Fly    67 TDDSFIMEKMVCNLISQGVIAIFGPSTGSSSDIIASICDTLDIPHIVYDWIPNESIPD----REH 127
            ..|||...|.||.|::.||.|||||.:..::..:.||||.::|||:...|       |    ||.
  Fly    75 PFDSFHAGKRVCGLLNIGVAAIFGPQSSHTASHVQSICDNMEIPHLENRW-------DYRLRRES 132

  Fly   128 STMTLNVHPDNLLLSQGLAEIVQSFAWRSFTVVYETDKELQQLQDILQVGEPISNPTTVKQLGPG 192
            ..:.|..||:.  ||:...:||:.:.|::||::||.:..:.:||::|:.......|.||:||...
  Fly   133 CLVNLYPHPNT--LSKAYVDIVRHWGWKTFTIIYENNDGIVRLQELLKAHGMTPFPITVRQLSDS 195

  Fly   193 DDHRPFLKEIKLSTDNCLILHCAPDNLLKILQQANELKMLGEYQSVFIPLLDTHSIDFGELSGVE 257
            .|:||.||:||.|.:..::|.|:.:.:.::|:||.::.|:.:|.|..:..||.|:::..|.....
  Fly   196 GDYRPLLKQIKNSAEAHIVLDCSTERIHEVLKQAQQIGMMSDYHSYLVTSLDLHTVNLDEFRYGG 260

  Fly   258 ANITTVRLMDPSDFHVKNVVHDWEEREKREGRYFKVDPNRVKSQMILLNDAVWLFSKGLTELGIF 322
            .|||..||:  ::..|.:||..|...||  |.....:...|:|:..|:.|||.||:|.|.:|...
  Fly   261 TNITGFRLI--NEKIVSDVVRQWSIDEK--GLLRSANLTTVRSETALMYDAVHLFAKALHDLDTS 321

  Fly   323 EELTAPDLECRRKKPWPFGKRIIEFIKARSEETSTGRIDFNENGQRSFFTLRFMELNSDGFLDLA 387
            :::....:.|..:..|..|..:|.::|....:..|..|.|:..|.|:.|.|..:||...|...:.
  Fly   322 QQIDIHPISCDGQSTWQHGFSLINYMKIVEMKGLTNVIKFDHQGFRTDFMLDIVELTPAGIRKIG 386

  Fly   388 TWDPV--NGLDVLNDDEESEKRVGQKLSNKTFIVSSRLGAPFLTLRE---PQEGEILTGNSRYEG 447
            ||:..  :|::......:.::.:...|.|||.:|::.|..|:...:|   |     |:||.::||
  Fly   387 TWNSTLPDGINFTRTFSQKQQEIEANLKNKTLVVTTILSNPYCMRKESAIP-----LSGNDQFEG 446

  Fly   448 YSIDLINEIAKMLNFKFEFRMSPDGKYGALNKVTQTWDGIVRQLIDGNADLGICDLTMTSSRRQA 512
            |::|||:||:|.|.|.::.::.|||.||:|||:|..|:|::|:|::..|||.|.|||:|..|.||
  Fly   447 YAVDLIHEISKSLGFNYKIQLVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQA 511

  Fly   513 VDFTPPFMTLGISILFSKPPTPPTDLFSFLSPFSLDVWIYMGSAYLFISLLLFALARMAPDDWEN 577
            ||||.|||.||:|||:.||...|.:|||||||.||||||||.:|||.:|:|||.||:..|.:|. 
  Fly   512 VDFTTPFMNLGVSILYRKPIKQPPNLFSFLSPLSLDVWIYMATAYLGVSVLLFILAKFTPYEWP- 575

  Fly   578 PHPCKEPEEVENIWSIMNTTWLSIGSLMGQGCDILPKAASTRLVTGMWWFFALMMLNSYTANLAA 642
            .:.....|:||:.::::|..|.:|||||.||||.||||.|||:|.|:||||.|:|::||||||||
  Fly   576 AYTDAHGEKVESQFTLLNCMWFAIGSLMQQGCDFLPKALSTRMVAGIWWFFTLIMISSYTANLAA 640

  Fly   643 FLTNSRQANSINSAEDLAAQSKIKYGAMAGGSTMGFFRDSNFSTYQKMWTAMESASPSVFTKTND 707
            |||..|..:.|.||||||.|::|||||:.||||..|||||..||||:||:.||||.|||||.:|.
  Fly   641 FLTVERMDSPIESAEDLAKQTRIKYGALKGGSTAAFFRDSKISTYQRMWSFMESARPSVFTASNG 705

  Fly   708 EGVERVQKGKNLYAFLMESTTLEYNVERKCDLVQIGGWLDYKSYGIAMPFNSPYRKQISAAVLKL 772
            ||||||.|||..||||||||::||..||.|:|.|:||.||.||||||.|.|||||..|::.:|||
  Fly   706 EGVERVAKGKGSYAFLMESTSIEYVTERNCELTQVGGMLDTKSYGIATPPNSPYRTAINSVILKL 770

  Fly   773 GELGQLAELKRKWWKEMHGGGNCE-KSDEDGGDTPELGLENVGGVFLVLGLGLLSAMVLGCTEFL 836
            .|.|:|..||.|||||..|||.|. ::.:......||||.||||||:||..|:..|.|:...||:
  Fly   771 QEEGKLHILKTKWWKEKRGGGKCRVETSKSSSAANELGLANVGGVFVVLMGGMGVACVIAVCEFV 835

  Fly   837 WNVKSVAIEEKIS 849
            |..:.||:||::|
  Fly   836 WKSRKVAVEERLS 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
clumsyNP_001036373.1 PBP1_iGluR_Kainate 26..396 CDD:107377 123/384 (32%)
ANF_receptor 39..379 CDD:279440 115/347 (33%)
PBP2_iGluR_Kainate 414..787 CDD:270432 217/375 (58%)
Lig_chan 548..812 CDD:278489 158/264 (60%)
KaiR1DNP_650925.1 PBP1_iGluR_Kainate 31..397 CDD:107377 123/379 (32%)
ANF_receptor 42..378 CDD:279440 115/349 (33%)
Periplasmic_Binding_Protein_Type_2 415..785 CDD:304360 217/375 (58%)
Lig_chan 547..823 CDD:278489 166/276 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D16847at50557
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
98.870

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