DRSC/TRiP Functional Genomics Resources

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Protein Alignment clumsy and Ir75d

DIOPT Version :9

Sequence 1:NP_001036373.1 Gene:clumsy / 35394 FlyBaseID:FBgn0026255 Length:1002 Species:Drosophila melanogaster
Sequence 2:NP_649074.2 Gene:Ir75d / 40065 FlyBaseID:FBgn0036829 Length:675 Species:Drosophila melanogaster


Alignment Length:658 Identity:131/658 - (19%)
Similarity:230/658 - (34%) Gaps:204/658 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   268 PSDFHVKNVVHDWEEREKREGRYFKVDPNRVKSQMILLNDAVWLFSKGLTELGIFEELTAPDLEC 332
            |..||..|..| ||                  :..:|                       |.|  
  Fly   116 PKSFHANNSTH-WE------------------TSFLL-----------------------PAL-- 136

  Fly   333 RRKKPWPFGKRIIEFIKARSEETSTGRIDFNENGQRSFFTLRFMELNSDGFLDLATWDPVNGLDV 397
                |:..|..::||    |.|.:...:.::...:.::||       ::.|..|.|.|| ..:|:
  Fly   137 ----PYKMGILLLEF----SSECALNLLRWSAASEHNYFT-------TNRFWLLLTEDP-GDIDL 185

  Fly   398 LNDDE-----ESEKR------------------------------VGQKLSNKTFIVSS--RLGA 425
            |.|.|     :||.|                              ||..:.|...::.:  ..|:
  Fly   186 LEDPEIFIPPDSELRVLHYENVGNFSCSLIDLYKVAAWKPLKRTLVGHNIRNSRHVIHALQHFGS 250

  Fly   426 PFLTLREPQEGEILTGN---------SRYEGYSIDLINEIAK-----MLNFKFEFRMSPDGKYGA 476
            . :|.|:..||.:....         :..|..|:..|:.|:|     ||.......||    |..
  Fly   251 A-ITYRQDLEGIVFNSAIVIAFPDLFTNIEDLSLRHIDTISKVNHRLMLELANRLNMS----YNT 310

  Fly   477 LNKVTQTW-------DGIVRQLIDGNADLGICDLTMTSSRRQAVDFTPPFMTLGISILFSKPP-T 533
            ...|...|       ||::.:......||....:.|...|...|||......:...|:|.:|| :
  Fly   311 YQTVNYGWRQPNGSFDGLMGRFQRYELDLAQLAIFMRLDRIALVDFVAETYRVRAGIMFRQPPLS 375

  Fly   534 PPTDLFSFLSPFSLDVWIYMGSAYLFISLLLFALARMAPDDWENPHPCKEPEEVENIWSIMNTTW 598
            ...::|:.  ||..|||:.:      :.||:.....:..:.:.:||        .:..|.|:|..
  Fly   376 AVANIFAM--PFENDVWVSI------LMLLIITTVVLVLELFFSPH--------NHDMSYMDTLN 424

  Fly   599 LSIGSLMGQGCDILPKAASTRLVTGMWWFFALMMLNSYTANLAAFLTNSRQANSINSAEDLAAQS 663
            ...|::..||..:..:..|.|::....:..||.:..|::||:.|.|.:  .:::|.|..|| .||
  Fly   425 FVWGAMCQQGFYVEVRNRSARIIVFTTFVAALFLFTSFSANIVALLQS--PSDAIQSLSDL-GQS 486

  Fly   664 KIKYGAMAGGSTMGFFRDSNFSTYQKMWTAMESASPSVFTKTNDEGVERV------QKGKNLY-- 720
            .::.|.          :|:.   |.|::          ||::.|...:.:      .||:|:|  
  Fly   487 PLEIGV----------QDTQ---YNKIY----------FTESTDPVTKNLYHKKIASKGENIYMR 528

  Fly   721 ----AFLMESTTLEYNVE---------------RKCDLVQIGGWLDYKSYGIAMPF--NSPYRKQ 764
                ...|.:....|.||               .||.|:::.   .::...:|:|.  |.||::.
  Fly   529 PLLGMEKMRTGLFAYQVELQAGYQIVSDTFSEPEKCGLMELE---PFQLPMLAIPTRKNFPYKEL 590

  Fly   765 ISAAVLKLGELGQLAELKRKWWKEMHGGGNCEKSDEDGGDTPELGLENVGGVFLVLGLGLLSAMV 829
            |...:....|:..:...:|||..:.      .|.:...|....:|:........:.|.|...:.|
  Fly   591 IRRQLRWQREVSLVNREERKWIPQK------PKCEGGVGGFVSIGITECRYALGIFGCGAAVSFV 649

  Fly   830 LGCTEFLW 837
            |...||::
  Fly   650 LFLFEFIF 657

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
clumsyNP_001036373.1 PBP1_iGluR_Kainate 26..396 CDD:107377 23/127 (18%)
ANF_receptor 39..379 CDD:279440 18/110 (16%)
PBP2_iGluR_Kainate 414..787 CDD:270432 90/425 (21%)
Lig_chan 548..812 CDD:278489 59/292 (20%)
Ir75dNP_649074.2 Periplasmic_Binding_Protein_Type_2 299..>483 CDD:304360 45/205 (22%)
Lig_chan 388..644 CDD:278489 60/304 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462621
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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