DRSC/TRiP Functional Genomics Resources

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Protein Alignment clumsy and GluRIIE

DIOPT Version :9

Sequence 1:NP_001036373.1 Gene:clumsy / 35394 FlyBaseID:FBgn0026255 Length:1002 Species:Drosophila melanogaster
Sequence 2:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster


Alignment Length:939 Identity:318/939 - (33%)
Similarity:484/939 - (51%) Gaps:103/939 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LFLTHFLLI--ALPVLADIDRSQF---------------MVGSIFTSDKDESEIAFRTAVDRANI 51
            :|..||:::  ...:...::.:|:               .:|.:...:.::..|.|..|:|.|| 
  Fly     1 MFFNHFVILWSLFSIHISVNWAQYENFGGYDNYQSLESVPIGLLTDQNTEQMNIVFDHAIDVAN- 64

  Fly    52 LERNVELVPIVVYANTDDSFIMEKMVCNLISQGVIAIFGPSTGSSSDIIASICDTLDIPHIVYDW 116
            .|....|..:....|..|::.....:|.::..|:..:||||:..::..:.||||.:||||| |.:
  Fly    65 QEVGTSLTSLKEEVNYGDAYQSYGKLCRMLETGIAGVFGPSSRHTAVHLMSICDAMDIPHI-YSY 128

  Fly   117 IPNESIPDREHSTMTLNVHPDNLLLSQGLAEIVQSFAWRSFTVVYETDKELQQLQDI-LQVGEPI 180
            :        ..:....|:||....|::.|..::..|.|..|..:||:.:.|..|.:: ..:|:..
  Fly   129 M--------SENAEGFNLHPHPADLAKALYSLITEFNWTRFIFLYESAEYLNILNELTTMLGKSG 185

  Fly   181 SNPTTVK---QLGPGDDHRPFLKEIKLSTDNCLILHCAPDNLLKILQQANELKMLGEYQSVFIPL 242
            :..|.::   ||  ..:::..|:.::.|.||.:::..:.:.:.:.|.||.::.::.|.....|..
  Fly   186 TVITVLRYDMQL--NGNYKQVLRRVRKSVDNRIVVVGSSETMPEFLNQAQQVGIINEDYKYIIGN 248

  Fly   243 LDTHSIDFGELSGVEANITTVRLMDPSDFHVKNVV----HDWEEREKREGRYFKVDPNRVKSQMI 303
            ||.||.|..|....|||||.:||..|....||.::    :..::.|.|.|..      .:..:|.
  Fly   249 LDFHSFDLEEYKYSEANITGLRLFSPEKMAVKELLMKLGYPTDQDEFRNGSC------PITVEMA 307

  Fly   304 LLNDAVWLFSKGLTELGIFEELTAPDLECRRKKPWP------------FGKRIIEFIKA--RSEE 354
            |..|||.||::.|..|..              ||.|            .|.....:::.  .::.
  Fly   308 LTYDAVQLFAQTLKNLPF--------------KPMPQNCSQRTESVRDDGSSFKNYMRTLRLTDR 358

  Fly   355 TSTGRIDFNENGQRSFFTLRFMELNSDGFLDLATWDPVNGLDVLNDDEESEKR----------VG 409
            ..||.|.| |...|..:.|..:||...|.:.:.|||        .|.:...:|          |.
  Fly   359 LLTGPIYF-EGNVRKGYHLDVIELQPSGIVKVGTWD--------EDRQYRPQRLAPTTAQFDSVD 414

  Fly   410 QKLSNKTFIV-SSRLGAPFLTLREPQEGEILTGNSRYEGYSIDLINEIAKMLNFKFEFRMSPDGK 473
            ..|:|||||: .|....|:..|.|..:.  |.|||:||||.:|||.|:|..|.|.|.| ::....
  Fly   415 NSLANKTFIILLSVPNKPYAQLVETYKQ--LEGNSQYEGYGVDLIKELADKLGFNFTF-VNGGND 476

  Fly   474 YGALNKVTQTWDGIVRQLIDGNADLGICDLTMTSSRRQAVDFTPPFMTLGISILFSKPPTPPTDL 538
            ||:.||.|....|::|:::.|.|||.|.|||:||.|.||:|||.|||.|||:||:.||.....:|
  Fly   477 YGSYNKSTNESTGMLREIMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPEL 541

  Fly   539 FSFLSPFSLDVWIYMGSAYLFISLLLFALARMAPDDWENPHPC-KEPEEVENIWSIMNTTWLSIG 602
            |:|:.|||.:||.::|.::|.:||..|.|.|::|.:|:||:|| :||||:||.:::.|:.|.:.|
  Fly   542 FTFMDPFSEEVWWFLGFSFLGVSLSFFILGRLSPSEWDNPYPCIEEPEELENQFTLGNSIWFTTG 606

  Fly   603 SLMGQGCDILPKAASTRLVTGMWWFFALMMLNSYTANLAAFLTNSRQANSINSAEDLA-AQSKIK 666
            :|:.||.:|.|||.|||.|...||||.|::::|||||||||||..:..:.|||.:||| .:..:.
  Fly   607 ALLQQGSEIGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDDLADNKDGVV 671

  Fly   667 YGAMAGGSTMGFFRDSNFSTYQKMWTAMESASPSVFTKTNDEGVERVQKGKNLYAFLMESTTLEY 731
            |||...|||..||..|....|:||...| |.:|...|:.|.|||.|| |....||||||||::||
  Fly   672 YGAKKTGSTRNFFMTSAEERYKKMNKFM-SENPQYLTEDNMEGVNRV-KTNTHYAFLMESTSIEY 734

  Fly   732 NVERKCDLVQIGGWLDYKSYGIAMPFNSPYRKQISAAVLKLGELGQLAELKRKWWKEMHGGGNCE 796
            |.:|:|:|.:||..||.|.|||||..:.|:|.:.:.|:|:|.|.|.|.::|.|||.|: |.|.| 
  Fly   735 NTKRECNLKKIGDALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKNKWWNEV-GTGIC- 797

  Fly   797 KSDEDGGDTPELGLENVGGVFLVLGLGLLSAMVLGCTEFLWNVKSVAIEEKISLKEAFKSEALFA 861
            .:.||..|...|.:.|:.|||.||.:|...|::.|...::..|...|...::.|::|.|.|..|.
  Fly   798 ATKEDAPDATPLDMNNLEGVFFVLLVGSCCALLYGIISWVLFVMKKAHHYRVPLRDALKEEFQFV 862

  Fly   862 ARIWITTKPVHTSSESGSSNSSSSSSSRS 890
            ...   ...|.....|.|..|.|..||.|
  Fly   863 IDF---NNYVRVLKNSASIYSRSRQSSMS 888

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
clumsyNP_001036373.1 PBP1_iGluR_Kainate 26..396 CDD:107377 97/391 (25%)
ANF_receptor 39..379 CDD:279440 91/361 (25%)
PBP2_iGluR_Kainate 414..787 CDD:270432 180/375 (48%)
Lig_chan 548..812 CDD:278489 124/265 (47%)
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 97/394 (25%)
ANF_receptor 51..382 CDD:279440 91/363 (25%)
PBP2_iGluR_Kainate 419..790 CDD:270432 180/375 (48%)
Lig_chan 551..824 CDD:278489 130/276 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462602
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D17567at33392
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
98.750

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