DRSC/TRiP Functional Genomics Resources

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Protein Alignment clumsy and Nmdar2

DIOPT Version :9

Sequence 1:NP_001036373.1 Gene:clumsy / 35394 FlyBaseID:FBgn0026255 Length:1002 Species:Drosophila melanogaster
Sequence 2:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster


Alignment Length:838 Identity:203/838 - (24%)
Similarity:337/838 - (40%) Gaps:166/838 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 FGPSTGSSSDIIASICDTLDIPHIVYDWIPNESIPDR--EHSTMTLNVHPDNLLLSQGLAEIVQS 151
            ||.|| :|:.....:...|.||  |..|..:.|..:|  ..||:.|.:.|.....|..:..|::.
  Fly   188 FGHST-ASAQYFLQLAGYLGIP--VISWNADNSGLERRASQSTLQLQLAPSIEHQSAAMLSILER 249

  Fly   152 FAWRSFTVVYETDKELQQLQDILQ-VGEPISNPTTVKQLGPGDDHRPF-------------LKEI 202
            :.|..|:||   ..::....|.:| |.|.::..         .:|..|             |.|:
  Fly   250 YKWHQFSVV---TSQIAGHDDFVQAVRERVAEM---------QEHFKFTILNSIVVTRTSDLMEL 302

  Fly   203 KLSTDNCLILHCAPDNLLKILQQANELKMLGE------YQSVFIPLLDTHS-IDFGELSGVEANI 260
            ..|....::|:......:.||:.|.|:|:.||      .||| |...|.|| ...|.| ||..:.
  Fly   303 VNSEARVMLLYATQTEAITILRAAEEMKLTGENYVWVVSQSV-IEKKDAHSQFPVGML-GVHFDT 365

  Fly   261 TTVRLMDPSDFHVKNVVHDWEEREKREGRYFKVDP----NRVKSQMILLND---AVW----LFSK 314
            ::..||:.....:|...:..|.        :..||    .|:.:|.:...|   ..|    :|.|
  Fly   366 SSAALMNEISNAIKIYSYGVEA--------YLTDPANRDRRLTTQSLSCEDEGRGRWDNGEIFFK 422

  Fly   315 GLTELGIFEELTAPDLE-------------CRRKKPWPFGKRII--EFIKARSEETSTGRIDFNE 364
            .|..:.|..:|..|::|             ....:|....|.::  |....:|.||.  ::|..:
  Fly   423 YLRNVSIEGDLNKPNIEFTADGDLRSAELKIMNLRPSANNKNLVWEEIGVWKSWETQ--KLDIRD 485

  Fly   365 -----------NGQRSFFTLRFMELNSDGFLDLATWDPVNG---LD------VLNDDE-ESEKRV 408
                       .|....|.|:...|....:::|:..|||:|   :|      |..|.| .::..|
  Fly   486 IAWPGNSHAPPQGVPEKFHLKITFLEEAPYINLSPADPVSGKCLMDRGVLCRVAADHEMAADIDV 550

  Fly   409 GQKLSNKTFIVSSRLGAPFLTLREPQEGEILTGNSRYE---GYSIDLINEIAKMLNFKFEFRMSP 470
            ||...|::|                           |:   |:.|||:.:.|:.|.|.:|.....
  Fly   551 GQAHRNESF---------------------------YQCCSGFCIDLLEKFAEELGFTYELVRVE 588

  Fly   471 DGKYGALNKVTQTWDGIVRQLIDGNADLGICDLTMTSSRRQAVDFTPPFMTLGISILFSK----- 530
            |||:|.|.  ...|:|::..|::...|:.:..|.:.:.|...|||:.|||..||:|:.:|     
  Fly   589 DGKWGTLE--NGKWNGLIADLVNRKTDMVLTSLMINTEREAVVDFSEPFMETGIAIVVAKRTGII 651

  Fly   531 PPTPPTDLFSFLSPFSLDVWIYMG-SAYLFISLLLFALARMAPDDWENPHPCKEPEEVENIWSIM 594
            .||      :||.||....|:.:| .|....:.::|....::|..::.....:........:|:.
  Fly   652 SPT------AFLEPFDTASWMLVGIVAIQAATFMIFLFEWLSPSGYDMKLYLQNTNVTPYRFSLF 710

  Fly   595 NTTWLSIGSLMGQGCDI-LPKAASTRLVTGMWWFFALMMLNSYTANLAAFLTNSRQANSINSAED 658
            .|.||....|......: .|:..::|.:|.:|..||::.|..||||||||:....:.:..:...|
  Fly   711 RTYWLVWAVLFQAAVHVDSPRGFTSRFMTNVWALFAVVFLAIYTANLAAFMITREEFHEFSGLND 775

  Fly   659 ------LAAQSKIKYGAMAGGSTMGFFRDSNFSTYQKMWTAMESASPSVFTKTN-DEGVERVQKG 716
                  .:.:...|:|.:....|        .||..|.:..|.:.... :.||: .:||..|..|
  Fly   776 SRLVHPFSHKPSFKFGTIPYSHT--------DSTIHKYFNVMHNYMRQ-YNKTSVADGVAAVLNG 831

  Fly   717 KNLYAFLMESTTLEYNV--ERKCDLVQIGGWLDYKSYGIAMPFNSPYRKQISAAVLKLGELGQLA 779
             ||.:|:.:.|.|:|.|  :..|.|:.:|.|.....||:|...||.|.:..:..:|:....|.|.
  Fly   832 -NLDSFIYDGTVLDYLVAQDEDCRLMTVGSWYAMTGYGLAFSRNSKYVQMFNKRLLEFRANGDLE 895

  Fly   780 ELKRKWWKEMHGGGNCEKSDEDGGDTPELGLENVGGVFLVLGLGLLSAMVLGCTEFLW 837
            .|:|.|..     |.|....::...:..|.||.....||:|..|:|.|.:|...|.::
  Fly   896 RLRRYWMT-----GTCRPGKQEHKSSDPLALEQFLSAFLLLMAGILLAALLLLLEHVY 948

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
clumsyNP_001036373.1 PBP1_iGluR_Kainate 26..396 CDD:107377 83/369 (22%)
ANF_receptor 39..379 CDD:279440 77/349 (22%)
PBP2_iGluR_Kainate 414..787 CDD:270432 100/391 (26%)
Lig_chan 548..812 CDD:278489 66/274 (24%)
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 74/328 (23%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 117/455 (26%)
Lig_chan 665..928 CDD:278489 67/277 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462664
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.890

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