DRSC/TRiP Functional Genomics Resources

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Protein Alignment clumsy and F59E12.8

DIOPT Version :10

Sequence 1:NP_001036373.1 Gene:clumsy / 35394 FlyBaseID:FBgn0026255 Length:1002 Species:Drosophila melanogaster
Sequence 2:NP_001364714.1 Gene:F59E12.8 / 186629 WormBaseID:WBGene00019123 Length:379 Species:Caenorhabditis elegans


Alignment Length:421 Identity:78/421 - (18%)
Similarity:149/421 - (35%) Gaps:108/421 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   494 GNADLGICDLTMTSSRRQAVDFTPPFMTLGISILFSKPPTPPTDLFSFLSPFSLDVWIYMGSAYL 558
            |..|:......||:.|...:.||.|.......:.....|....|:.....|||..||:.:....|
 Worm     8 GRIDMACGRFRMTADRANVLTFTYPTQFEVNQVYLITDPQKSVDVVFLFHPFSTTVWLLLSLTVL 72

  Fly   559 FISLLLFALARM---APDDWENPHPCKEPEEVEN-IWSIMNTTWLSIGSLMGQGCDILPKAAST- 618
            .::::.|.|..:   :..:.|:.:.|     ::| |:.::.:|:         ..:|.....|| 
 Worm    73 VVAIVFFILRFVEFKSTKETESSYEC-----IQNSIFQVLLSTF---------NLEIRVAKKSTF 123

  Fly   619 ---RLVTGMW---WFFALMMLNSYTANLAAFL--TNSRQANSINSAEDLAAQSKIKYGAMAGGST 675
               .|.:.:|   ||.  :.::.||:.|:..:  ::.||....|.           ||      .
 Worm   124 FAFHLFSTIWLLAWFH--VFIDFYTSELSGMMVVSDKRQVPFDNF-----------YG------F 169

  Fly   676 MGFFRDSNFSTYQKMWTAMESASPS-----VFTKTNDEGVERVQKGKNLYAFLMESTTLEYNVER 735
            :...|..|:    :::|......|.     ..:|.|....|.:.|....|..||:....|:...|
 Worm   170 IDHLRKGNY----RLFTPSADRIPECPHEITTSKCNAIFSEILSKHPPEYGDLMQLNDREFVSSR 230

  Fly   736 KCDLVQIGGWLDYKSYGIAMPFN-----------------------------SPYRKQISAAVLK 771
            |..||.. ||  |.:..|:..|:                             .||..:::..::|
 Worm   231 KIPLVGF-GW--YPAQRISSKFSIWTQELFHSDIWLIRDFPVCPAAYIVRPTFPYLDELNEMIIK 292

  Fly   772 LGELGQLAELKRKW---WKEMHGGGNCEKSDEDGGDTPELGLENVGGVFLVLGLG-------LLS 826
            :  |...:.:...:   :.|:...|...||        ...|..:..:||:..||       |::
 Worm   293 V--LPAFSRIDNHYTPAYPELTLTGKPSKS--------SFSLNQLSSIFLIHLLGAFVSTLFLIA 347

  Fly   827 AMVLGCTEFLWNVKSVAIEEKISLKEAFKSE 857
            .:|:.......|:.| .::.::...::.|.|
 Worm   348 ELVIAELTKRHNIDS-TLQTRLDNSKSLKME 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
clumsyNP_001036373.1 PBP1_iGluR_Kainate 27..397 CDD:380605
PBP2_iGluR_Kainate 414..787 CDD:270432 63/342 (18%)
F59E12.8NP_001364714.1 None
Blue background indicates that the domain is not in the aligned region.

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