DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment clumsy and Grin2c

DIOPT Version :9

Sequence 1:NP_001036373.1 Gene:clumsy / 35394 FlyBaseID:FBgn0026255 Length:1002 Species:Drosophila melanogaster
Sequence 2:XP_017169765.1 Gene:Grin2c / 14813 MGIID:95822 Length:1307 Species:Mus musculus


Alignment Length:1136 Identity:231/1136 - (20%)
Similarity:419/1136 - (36%) Gaps:301/1136 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 RTAVDRANILERNVELVPIVV-YANTDDSFIMEKMVCNLI------------------------- 81
            ||.:...|.|:..:|:.|:.: ..||:.|.|:.: :|.|:                         
Mouse   109 RTRLTPQNFLDLPLEIQPLTIGVNNTNPSSILTQ-ICGLLGAARVHGIVFEDNVDTEAVAQLLDF 172

  Fly    82 --SQGVIAIFGPSTGSS------------SDIIASICDTLDIPHIV---YDWIPNESIPDREHST 129
              ||..:.|...|.||:            ..:..|:...|.:...|   |||         ....
Mouse   173 VSSQTHVPILSISGGSAVVLTPKEPGSAFLQLGVSLEQQLQVLFKVLEEYDW---------SAFA 228

  Fly   130 MTLNVHPDNLLLSQGLAEIVQS--FAWRSFTVVYETDKELQQLQDILQVGEPISNPTTVKQLGPG 192
            :..::||.:.|..:|:..:..:  .:||              |.|:|.:           :||||
Mouse   229 VITSLHPGHALFLEGVRAVADASYLSWR--------------LLDVLTL-----------ELGPG 268

  Fly   193 DDHRPFLKEIKLSTDNCLILHCAPDNLLKILQQANELKMLGEYQSVFIPLLDTHSIDFGELSGVE 257
            .......:.::......|:.:|:.:....:..:|.:..::|......:|.|...|.|        
Mouse   269 GPRARTQRLLRQVDAPVLVAYCSREEAEVLFAEAAQAGLVGPGHVWLVPNLALGSTD-------- 325

  Fly   258 ANITTVRLMDPSDFHV---KNVVHDWEEREKREGRYFKVDPNRVKSQMILLNDAVWLFSKGL--- 316
                    ..|:.|.|   ..|...|....:::.|                 |.|.:.:.|.   
Mouse   326 --------APPAAFPVGLISVVTESWRLSLRQKVR-----------------DGVAILALGAHSY 365

  Fly   317 -TELGIFEELTAPDLECRRKKPWPFGKRIIEFIKARSEETSTGR-IDFNENGQRSFFTLRFMELN 379
             .:.|   .|.||..:| |..|.|.......|.:.....|..|| ..|:..|.....|:..:.||
Mouse   366 RRQYG---TLPAPAGDC-RSHPGPVSPAREAFYRHLLNVTWEGRDFSFSPGGYLVQPTMVVIALN 426

  Fly   380 SDGFLDL-ATWD--------PV-----NGLDVLNDDEESEKRVGQKLSNKTFIVSSRLGAPFLTL 430
            .....:: ..||        ||     ..|..:.|             ::...|::....||:.:
Mouse   427 RHRLWEMVGRWDHGVLYMKY
PVWPRYSTSLQPVVD-------------SRHLTVATLEERPFVIV 478

  Fly   431 REPQEGEILTG-------------NSRY-------------EGYSIDLINEIAKMLNFKFEFRMS 469
            ..|..|   ||             |..:             :|:.||::.::||::.|.::..:.
Mouse   479 ESPDPG---TGGCVPNTVPCRRQSNHTFSSGDITPYTKLCCKGFCIDILKKLAKVVKFSYDLYLV 540

  Fly   470 PDGKYGALNKVTQTWDGIVRQLIDGNADLGICDLTMTSSRRQAVDFTPPFMTLGISILF--SKPP 532
            .:||:|  .:|...|:|::.::....||:.|..||:...|.:.:||:.||:..|||::.  |...
Mouse   541 TNGKHG--KRVRGVWNGMIGEVYYKRADMAIGSLTINEERSEIIDFSVPFVETGISVMVARSNGT 603

  Fly   533 TPPTDLFSFLSPFSLDVWIYMGSAYL-FISLLLFALARMAPDDWENPHPCKEPEEVENIWSIMNT 596
            ..|:   :||.|:|..||:.|....| .:::.:|.....:|..: |.:..|..:.....::|..:
Mouse   604 VSPS---AFLEPYSPAVWVMMFVMCLTVVAITVFMFEYFSPVSY-NQNLTKGKKSGGPSFTIGKS 664

  Fly   597 TWLSIGSLMGQGCDI-LPKAASTRLVTGMWWFFALMMLNSYTANLAAFLTNSRQANSINSAEDLA 660
            .||....:......| .|:..:::::..:|.|||::.|.|||||||||:...:..::::...|..
Mouse   665 VWLLWALVFNNSVPIENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEQYIDTVSGLSDKK 729

  Fly   661 AQ------SKIKYGAMAGGSTMGFFRDSNFSTYQKMWTAMESASPSVFTKTNDEGVE----RVQK 715
            .|      ...::|.:..|||....|    |.|:.|.|.|        .|.|...||    .::.
Mouse   730 FQRPQDQYPPFRFGTVPNGSTERNIR----SNYRDMHTHM--------VKFNQRSVEDALTSLKM 782

  Fly   716 G-----KNLYAFLMESTTLEY--NVERKCDLVQIGGWLDYKS--YGIAMPFNSPYRKQISAAVLK 771
            |     :.|.||:.::..|.|  ..:..|.||.||....:.:  |||||..:|.:::.|..|:|:
Mouse   783 GARHVSRKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIAMQKDSHWKRAIDLALLQ 847

  Fly   772 -LGELGQLAELKRKWWKEMHGGGNCEKSDEDGGDTPELGLENVGGVFLVLGLGLLSAMVLGCTEF 835
             ||: |:..:|:..|.     .|.|. ::::...:.:|.::|:.|||.:|.:.:..|:::...|.
Mouse   848 FLGD-GETQKLETVWL-----SGICH-NEKNEVMSSKLDIDNMAGVFYMLLVAMGLALLVFAWEH 905

  Fly   836 L--WNVK-SVAIEEKISLKEAFKSEALFAARIWITTKPVHTSSESGSSNSSSSSSSRSKHSFKSQ 897
            |  |.:: ||....::....|| |..:::....:.:.|......|....:.|           :|
Mouse   906 LVYWKLRHSVPSSSQLDFLLAF-SRGIYSCFNGVQSLPSPARPPSPDLTAGS-----------AQ 958

  Fly   898 GLSMKSLKSS----GYQDVEASVHSKLKKIGSMF--------SLKSQKTVTP-----PPEIGWKL 945
            ...:|.|:::    ...||..|:....:.|.:..        :....::.||     |...||:.
Mouse   959 ANVLKMLQAARDMVSTADVSGSLDRATRTIENWGNNRRAPAPTTSGPRSCTPGPPGQPSPSGWRP 1023

  Fly   946 DKSTQIDVV----------------PTSDVDQELIPEV-EPHLPHRHHHHHHH------------ 981
            ....:..:.                |..||.:...... :...|.|..|...|            
Mouse  1024 PGGGRTPLARRAPQPPARPATCAGSPQPDVSRASCRHAWDARWPVRVGHQGSHLSASERRALPER 1088

  Fly   982 --RHHHHHHQPDQEHDRN--------PSPPE 1002
              .|.|.|:......:|:        |.|||
Mouse  1089 SLLHAHCHYSSFPRAERSGRPFLPLFPEPPE 1119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
clumsyNP_001036373.1 PBP1_iGluR_Kainate 26..396 CDD:107377 75/419 (18%)
ANF_receptor 39..379 CDD:279440 69/388 (18%)
PBP2_iGluR_Kainate 414..787 CDD:270432 107/422 (25%)
Lig_chan 548..812 CDD:278489 71/285 (25%)
Grin2cXP_017169765.1 PBP1_iGluR_NMDA_NR2 90..446 CDD:380601 73/408 (18%)
PBP2_iGluR_NMDA_Nr2 462..868 CDD:270436 109/433 (25%)
NMDAR2_C 905..>980 CDD:371139 15/86 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846273
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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