DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment clumsy and Grik2

DIOPT Version :9

Sequence 1:NP_001036373.1 Gene:clumsy / 35394 FlyBaseID:FBgn0026255 Length:1002 Species:Drosophila melanogaster
Sequence 2:XP_011241422.1 Gene:Grik2 / 14806 MGIID:95815 Length:943 Species:Mus musculus


Alignment Length:916 Identity:342/916 - (37%)
Similarity:509/916 - (55%) Gaps:104/916 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 YSLFLTHFLLIALPVLADIDRSQFMVGSIF----TSDKDESEIAFRTAVDRANILERNVELVP-- 60
            ||...||.|               ..|.||    :......|:|||.||   |.:.||..|:|  
Mouse    28 YSQGTTHVL---------------RFGGIFEYVESGPMGAEELAFRFAV---NTINRNRTLLPNT 74

  Fly    61 IVVY----ANTDDSFIMEKMVCNLISQGVIAIFGPSTGSSSDIIASICDTLDIPHIVYDWIPNES 121
            .:.|    .|..|||...|..|:.:|.||.||||||..||::.:.|||:.|.:|||...|  ...
Mouse    75 TLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRW--KHQ 137

  Fly   122 IPDREHSTMTLNVHPDNLLLSQGLAEIVQSFAWRSFTVVYETDKELQQLQDILQVGEPISNPTTV 186
            :.|.:.| ..::::||...||:.:.::||.|.|::.||||:....|.:||::::.....:....:
Mouse   138 VSDNKDS-FYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKI 201

  Fly   187 KQLGPGD--DHRPFLKEIKLSTDNCLILHCAPDNLLKILQQANELKMLGEYQSVFIPLLDTHSID 249
            :|| |.|  |.:|.|||:|...:..:|..|:.:....||:||..:.|:.||.......||..::|
Mouse   202 RQL-PADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALD 265

  Fly   250 FG--ELSGVEANITTVRLMDPSDFHVKNVVHDWEEREKREGRYFKVDPNRVKSQMI--------- 303
            ..  ..|||  |:|..|:::..:..|.:::..| ..|:.:.      |.:..|.::         
Mouse   266 VEPYRYSGV--NMTGFRILNTENTQVSSIIEKW-SMERLQA------PPKPDSGLLDGFMTTDAA 321

  Fly   304 LLNDAVWLFSKGLTELGIFEELTAPDLECRRKKPWPFGKRIIEFIKARSEETSTGRIDFNE-NGQ 367
            |:.|||.:.|..:.:   |.::|...|:|.|.|||.||.|.:..||....|..||||.||: ||.
Mouse   322 LMYDAVHVVSVAVQQ---FPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGL 383

  Fly   368 RSFFTLRFMELNSDGFLDLATWDPVNGLDVLNDDEESEKRVGQKLSNKTFIVSSRLGAPFLTLRE 432
            |:.|.|..:.|..:|...:.||||.:||::....:.....:...|||::.||::.|..|::..::
Mouse   384 RTDFDLDVISLKEEGLEKIGTWDPSSGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKK 448

  Fly   433 PQEGEILTGNSRYEGYSIDLINEIAKMLNFKFEFRMSPDGKYGALNKVTQTWDGIVRQLIDGNAD 497
            ..:.  |.||.|:|||.|||:.|::.:|.|.:|.|:..||||||.:.|...|:|:||:|||..||
Mouse   449 SDKP--LYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKAD 511

  Fly   498 LGICDLTMTSSRRQAVDFTPPFMTLGISILFSKPPTPPTDLFSFLSPFSLDVWIYMGSAYLFISL 562
            |.:..|.:|..|.:.:||:.||||||||||:.||......:||||:|.|.|:|:|:..|||.:|.
Mouse   512 LAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYILLAYLGVSC 576

  Fly   563 LLFALAR-----------------------------------MAPDDWENPHPCK-EPEEVENIW 591
            :||.:||                                   .:|.:|.|||||. :.:.|||.:
Mouse   577 VLFVIARQSKFSWFKYPNCSHYHHSQRCLCTQHLESYMELCLFSPYEWYNPHPCNPDSDVVENNF 641

  Fly   592 SIMNTTWLSIGSLMGQGCDILPKAASTRLVTGMWWFFALMMLNSYTANLAAFLTNSRQANSINSA 656
            :::|:.|..:|:||.||.:::|||.|||:|.|:||||.|::::|||||||||||..|..:.|:||
Mouse   642 TLLNSFWFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSA 706

  Fly   657 EDLAAQSKIKYGAMAGGSTMGFFRDSNFSTYQKMWTAMESASPSVFTKTNDEGVERVQKGKNLYA 721
            :|||.|:||:|||:..|:||.||:.|..|||.|||..|.|...||..|:|:||::||....  ||
Mouse   707 DDLAKQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD--YA 769

  Fly   722 FLMESTTLEYNVERKCDLVQIGGWLDYKSYGIAMPFNSPYRKQISAAVLKLGELGQLAELKRKWW 786
            |||||||:|:..:|.|:|.||||.:|.|.||:..|..||||.:|:.|:|:|.|.|:|..:|.|||
Mouse   770 FLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWW 834

  Fly   787 KEMHGGGNCEKSDEDGGDTPELGLENVGGVFLVLGLGLLSAMVLGCTEFLWNVKSVAIEEKISLK 851
            :    |..|  .:|:..:...||::|:||:|:||..||:.::.:...|||:..|..|..||.|..
Mouse   835 R----GNGC--PEEESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFLYKSKKNAQLEKRSFC 893

  Fly   852 EAFKSE 857
            .|...|
Mouse   894 SAMVEE 899

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
clumsyNP_001036373.1 PBP1_iGluR_Kainate 26..396 CDD:107377 127/393 (32%)
ANF_receptor 39..379 CDD:279440 117/359 (33%)
PBP2_iGluR_Kainate 414..787 CDD:270432 183/408 (45%)
Lig_chan 548..812 CDD:278489 129/299 (43%)
Grik2XP_011241422.1 PBP1_iGluR_Kainate 37..414 CDD:380605 128/395 (32%)
Periplasmic_Binding_Protein_Type_2 430..835 CDD:389745 183/408 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846277
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.760

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