DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG31624 and WLIM2a

DIOPT Version :9

Sequence 1:NP_001163031.1 Gene:CG31624 / 35393 FlyBaseID:FBgn0051624 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_181519.1 Gene:WLIM2a / 818577 AraportID:AT2G39900 Length:200 Species:Arabidopsis thaliana


Alignment Length:159 Identity:31/159 - (19%)
Similarity:59/159 - (37%) Gaps:46/159 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CHKCQEAI-TKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSGEPVCNKCFVERYTYT----- 65
            |..|::.: ...:::|.|.::|...|.|.||..::..:.::...|...|...|.:.:..:     
plant    10 CRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLFKESGSFSK 74

  Fly    66 ----------------------------------CAGCKKPI--LEKTICAMGERWHEACF-CCG 93
                                              ||.|.|.:  :|| :....:.:|::|| |..
plant    75 NFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIEK-VTVESQCYHKSCFKCSH 138

  Fly    94 GACKKPLASQTFYERDGKPYCKQDYENLF 122
            |.|  |::...:...:|..|||..:..||
plant   139 GGC--PISPSNYAALEGILYCKHHFAQLF 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31624NP_001163031.1 LIM 7..58 CDD:351770 11/51 (22%)
LIM 66..118 CDD:351770 17/54 (31%)
LIM 125..176 CDD:214528
WLIM2aNP_181519.1 LIM1_SF3 6..68 CDD:188824 12/57 (21%)
LIM2_SF3 109..169 CDD:188825 19/60 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 56 1.000 Inparanoid score I2587
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

Return to query results.
Submit another query.