DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31624 and pdlim3a

DIOPT Version :9

Sequence 1:NP_001163031.1 Gene:CG31624 / 35393 FlyBaseID:FBgn0051624 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_001019547.1 Gene:pdlim3a / 554148 ZFINID:ZDB-GENE-050505-1 Length:307 Species:Danio rerio


Alignment Length:49 Identity:13/49 - (26%)
Similarity:21/49 - (42%) Gaps:0/49 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VCHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSGEPVC 54
            :|.||...|...::....|..||:.|:|..|:|.:....:.....|..|
Zfish   243 MCDKCGNGIVGTVVKVQDKFRHPDCFVCTECEENLKQKGYYFIDDELYC 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31624NP_001163031.1 LIM 7..58 CDD:351770 13/48 (27%)
LIM 66..118 CDD:351770
LIM 125..176 CDD:214528
pdlim3aNP_001019547.1 PDZ_signaling 2..81 CDD:238492
DUF4749 134..214 CDD:292558
LIM_ALP_like 244..295 CDD:188746 13/48 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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