DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31624 and lims2

DIOPT Version :10

Sequence 1:NP_724318.1 Gene:CG31624 / 35393 FlyBaseID:FBgn0051624 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_001018506.2 Gene:lims2 / 553696 ZFINID:ZDB-GENE-050522-56 Length:377 Species:Danio rerio


Alignment Length:233 Identity:59/233 - (25%)
Similarity:88/233 - (37%) Gaps:64/233 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSGEPVCNKCFVERYTYT------ 65
            ||:|.|.:..|:|.|:..:|||:.|.|..|:..:.|..|....|.|:|..|...:...:      
Zfish   117 CHQCGEFVVGRVIKAMNSSWHPDCFCCEVCEAVLADVGFVKSGGRPLCRSCHSRQKALSLGKHVC 181

  Fly    66 --------------------------------------------------------CAGCKKPIL 74
                                                                    |..|::|:.
Zfish   182 QKCLCVVEEPLMYRSDPYHPDHFNCSHCGKELTADARELKGELYCLPCHDKLGVPICGACRRPVE 246

  Fly    75 EKTICAMGERWHEACFCCGGACKKPLASQTFYERDGKPYCKQDYENLFAARCAKCEKPITDSAVL 139
            .:.:.|||::||...|.| ..|:||......|||.|..||:..|..||...|.:|.:.|....|.
Zfish   247 GRVVNAMGKQWHVEHFVC-VKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFQCNRVIEGDVVS 310

  Fly   140 AMNVKWHRNCFQCNKCENPITSQTFTIDGD-KPVCPAC 176
            |:|..|...||.|:.|.:.:|.:...::.| ||||..|
Zfish   311 ALNKAWCVRCFSCSTCTSRLTLKDKFVEIDLKPVCKHC 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31624NP_724318.1 LIM 7..58 CDD:413332 18/50 (36%)
LIM 66..118 CDD:413332 19/51 (37%)
LIM 125..176 CDD:214528 17/51 (33%)
lims2NP_001018506.2 LIM1_PINCH 56..114 CDD:188717
LIM2_PINCH 117..168 CDD:188718 18/50 (36%)
LIM3_PINCH 181..230 CDD:188719 0/48 (0%)
LIM4_PINCH 236..289 CDD:188720 19/53 (36%)
LIM5_PINCH 297..350 CDD:188721 18/52 (35%)
Blue background indicates that the domain is not in the aligned region.

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