DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31624 and LIMS1

DIOPT Version :10

Sequence 1:NP_724318.1 Gene:CG31624 / 35393 FlyBaseID:FBgn0051624 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_001358423.1 Gene:LIMS1 / 3987 HGNCID:6616 Length:398 Species:Homo sapiens


Alignment Length:234 Identity:66/234 - (28%)
Similarity:89/234 - (38%) Gaps:65/234 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 CHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQS-----------------GEPVC 54
            ||:|.|.|..|:|.|:..:||||.|.|..|.|.:.|..|...:                 |:.:|
Human   133 CHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYIC 197

  Fly    55 NKCFV-------------------------------------ERYTY---------TCAGCKKPI 73
            .||..                                     |.|..         .|..|::||
Human   198 QKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPI 262

  Fly    74 LEKTICAMGERWHEACFCCGGACKKPLASQTFYERDGKPYCKQDYENLFAARCAKCEKPITDSAV 138
            ..:.:.|||::||...|.| ..|:||......|||.|..||:..|..||...|..|.:.|....|
Human   263 EGRVVNAMGKQWHVEHFVC-AKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVV 326

  Fly   139 LAMNVKWHRNCFQCNKCENPITSQTFTIDGD-KPVCPAC 176
            .|:|..|..|||.|:.|...:|.:...::.| ||||..|
Human   327 SALNKAWCVNCFACSTCNTKLTLKDKFVEIDLKPVCKHC 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31624NP_724318.1 LIM 7..58 CDD:413332 21/67 (31%)
LIM 66..118 CDD:413332 20/51 (39%)
LIM 125..176 CDD:214528 18/51 (35%)
LIMS1NP_001358423.1 LIM1_PINCH 72..130 CDD:188717
LIM2_PINCH 133..184 CDD:188718 18/50 (36%)
LIM3_PINCH 197..247 CDD:188719 5/49 (10%)
LIM4_PINCH 253..306 CDD:188720 20/53 (38%)
LIM5_PINCH 314..367 CDD:188721 19/52 (37%)
Blue background indicates that the domain is not in the aligned region.

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