DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31624 and Lims2

DIOPT Version :10

Sequence 1:NP_724318.1 Gene:CG31624 / 35393 FlyBaseID:FBgn0051624 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_001402626.1 Gene:Lims2 / 361303 RGDID:1305273 Length:341 Species:Rattus norvegicus


Alignment Length:172 Identity:54/172 - (31%)
Similarity:84/172 - (48%) Gaps:3/172 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VCHKCQEAITKRMITALGKTWHPEHFLCHHCDEQILDATFNVQSGEPVCNKCFVERYTYTCAGCK 70
            :|.:|..||.::.:......:||:||.|.||.:::......:: ||..|..|..:.....|..|:
  Rat   139 ICQRCHLAIDEQPLMFKNDPYHPDHFSCSHCGKELTSDARELK-GELYCLPCHDKMGIPICGACR 202

  Fly    71 KPILEKTICAMGERWHEACFCCGGACKKPLASQTFYERDGKPYCKQDYENLFAARCAKCEKPITD 135
            :||..:.:.|:|::||...|.| ..|:||......||:.|..||:..|..||...|..|...|..
  Rat   203 RPIEGRVVNALGKQWHVEHFVC-AKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEG 266

  Fly   136 SAVLAMNVKWHRNCFQCNKCENPITSQTFTIDGD-KPVCPAC 176
            ..|.|::..|..|||.|:.|...:|.:...::.| ||||..|
  Rat   267 DVVSALSKAWCVNCFSCSACNMKLTLKNKFVEFDMKPVCKRC 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31624NP_724318.1 LIM 7..58 CDD:413332 14/50 (28%)
LIM 66..118 CDD:413332 18/51 (35%)
LIM 125..176 CDD:214528 17/51 (33%)
Lims2NP_001402626.1 LIM1_PINCH 15..73 CDD:188717
LIM2_PINCH 76..127 CDD:188718
LIM3_PINCH 140..190 CDD:188719 14/50 (28%)
LIM4_PINCH 196..249 CDD:188720 18/53 (34%)
LIM5_PINCH 257..310 CDD:188721 18/52 (35%)
Blue background indicates that the domain is not in the aligned region.

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