DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nbr and RRP6

DIOPT Version :10

Sequence 1:NP_610094.1 Gene:Nbr / 35385 FlyBaseID:FBgn0032924 Length:625 Species:Drosophila melanogaster
Sequence 2:NP_014643.1 Gene:RRP6 / 854162 SGDID:S000005527 Length:733 Species:Saccharomyces cerevisiae


Alignment Length:492 Identity:114/492 - (23%)
Similarity:177/492 - (35%) Gaps:142/492 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 DLLLPKLRELL---------DNGLYKEVTQWSISLQLTHEFDML-ELAFPLIAI-----EKLPLA 220
            |:||.::..::         |...||.:.: ..|..|..:.|.| ::|..:|..     |...|.
Yeast     7 DVLLSRVINVVRAASSLASQDVDFYKNLDR-GFSKDLKSKADKLADMANEIILSIDEHHESFELK 70

  Fly   221 EEYLDHATQQRLPFVKFLDSLLHKEKSVLELCEHLLDRYK---NLKISHNVLSYRPMAKIVARLA 282
            ||.:......   |...:|:|       ||:.:|.||:..   |.|...:.|.|         |.
Yeast    71 EEDISDLWNN---FGNIMDNL-------LEMSDHSLDKLNCAINSKSRGSDLQY---------LG 116

  Fly   283 KKYGFDDAVTPNYKFTKTCSYLHYLYREYEKTRMNLASFREVVSVHAFNHEL--RTDFVKYLASA 345
            :..|      .|:..||          ..||.::...|..:....|.|...|  :.:.:|.|   
Yeast   117 EFSG------KNFSPTK----------RVEKPQLKFKSPIDNSESHPFIPLLKEKPNALKPL--- 162

  Fly   346 GAHSEAIYWYTEFNIDPKDCPLEIETQVSQNGAGKASGWESPG----KERCPSSRCDMYLTMDLP 406
               ||::....:...:|...|...|.::....       .||.    :|..||...|        
Yeast   163 ---SESLRLVDDDENNPSHYPHPYEYEIDHQE-------YSPEILQIREEIPSKSWD-------- 209

  Fly   407 DECLIIVNKADEFDRMLYHLQ--QECVIYLDSEWMQSVCGDNQLCVLQIATGHNVYLIDCLARES 469
            |...|.|:.:.|.:.||..|:  :|..:.|:....:|..|  .:|::||:|....||:|.|   .
Yeast   210 DSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYG--IVCLMQISTRERDYLVDTL---K 269

  Fly   470 LRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSLPLQL-----------RLQMPHH---YLD 520
            || |:..:|. .:|.|.:|.||......|:..|||.|.|.:           .:.:|.|   || 
Yeast   270 LR-ENLHILN-EVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYL- 331

  Fly   521 LRNLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRPLRREQILYAAI 585
            |.|               |.|.                 |.:|..|.::|..|||.:....||..
Yeast   332 LEN---------------FANF-----------------KTSKKYQLADWRIRPLSKPMTAYARA 364

  Fly   586 DARCLMLIY----NTLIERVSFIQAVIE-KSIASNNF 617
            |...|:.||    |.|||.......:.| :::|...|
Yeast   365 DTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRF 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NbrNP_610094.1 mut-7_like_exo 413..599 CDD:176655 55/205 (27%)
RRP6NP_014643.1 PMC2NT 14..100 CDD:462352 21/96 (22%)
Rrp6p_like_exo 209..399 CDD:99850 62/237 (26%)
HRDC 435..515 CDD:128635
Blue background indicates that the domain is not in the aligned region.

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