DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment E2f2 and efl-1

DIOPT Version :9

Sequence 1:NP_001286115.1 Gene:E2f2 / 35381 FlyBaseID:FBgn0024371 Length:370 Species:Drosophila melanogaster
Sequence 2:NP_507289.1 Gene:efl-1 / 180133 WormBaseID:WBGene00001161 Length:342 Species:Caenorhabditis elegans


Alignment Length:332 Identity:86/332 - (25%)
Similarity:141/332 - (42%) Gaps:82/332 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 QSQPGQQRSVGSLVLLTQKFVDLVKANE-GSIDLKAATKILDV-QKRRIYDITNVLEGIGLIDKG 128
            |.|.| .|:..||.||.::|:.:::.:. |..||..|.:.|:| ||||||||||||||||||:| 
 Worm    59 QPQMG-TRADKSLGLLAKRFIRMIQYSPYGRCDLNTAAEALNVRQKRRIYDITNVLEGIGLIEK- 121

  Fly   129 RHCSLVRWRGGGFN-NAK----------DQENYDLARSRTNHLKMLEDDLDRQLEYAQRNLRYVM 182
            |..::::|:||.|. |.|          :::..:..::....|...|:.::::..:.|::||.:.
 Worm   122 RSKNMIQWKGGDFMLNVKEGKRQSATTEEEDRMEQLKAEIEQLNKEEELIEQRQRWLQQSLRNMT 186

  Fly   183 QDPSNRSYAYVTRDDLLDIFGDDSVFTIP---------NYDEEVDIKRNHYELAVSLDNGSAIDI 238
            :...|...:||.|..|.:|.|.|....|.         :..|:|:| ..........|....:..
 Worm   187 ESVENNKLSYVLRSQLAEIQGSDLTIGIQTRVGTQVRLSDPEQVEI-HGGPSWCYLKDPSGPLRA 250

  Fly   239 RLVTNQGKSTTNPHDVDGFFDYHRLDTPSPSTSSHSSEDGNAPACAGNVITDEHGYSCNPGMKDE 303
            .:|:|        |::..|....|...|     .....|.:||        ||        |.|:
 Worm   251 AIVSN--------HELHDFVQRERAKRP-----GEEHVDADAP--------DE--------MMDD 286

  Fly   304 MKLLENELTAKIIFQNYLSGHSLRRFYPDDP----NLENPPLLQLNPP--QEDFNFALKSDE--- 359
            .:           ::|       ||...||.    ..:.|.:..|.||  .:|:.::...||   
 Worm   287 SR-----------YRN-------RRTINDDEMFGFEQKVPAMKHLEPPPASDDYVYSSTGDEYRG 333

  Fly   360 -GICELF 365
             .|.:|:
 Worm   334 DSIVDLY 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E2f2NP_001286115.1 E2F_TDP 77..138 CDD:280479 32/62 (52%)
E2F_DD 159..>218 CDD:304549 15/67 (22%)
efl-1NP_507289.1 E2F_TDP 67..131 CDD:367033 32/64 (50%)
coiled coil 152..187 CDD:271137 5/34 (15%)
E2F_CC-MB 157..254 CDD:374536 18/97 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166518
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2577
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1087250at2759
OrthoFinder 1 1.000 - - FOG0000356
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12081
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3254
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.840

Return to query results.
Submit another query.